Factsheet for PGSC0003DMT400019113

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019119	Potato	cytosol	49.77	99.08
Solyc11g067240.1.1	Tomato	plastid	98.61	98.61
PGSC0003DMT400050194	Potato	cytosol	86.34	85.75
PGSC0003DMT400054532	Potato	cytosol	32.87	36.6
PGSC0003DMT400071442	Potato	cytosol	27.55	36.5
PGSC0003DMT400042654	Potato	cytosol	36.11	30.12
PGSC0003DMT400031598	Potato	endoplasmic reticulum	23.61	28.41
PGSC0003DMT400047633	Potato	endoplasmic reticulum	24.54	28.04
PGSC0003DMT400013963	Potato	endoplasmic reticulum	24.77	27.3
PGSC0003DMT400052226	Potato	nucleus	34.26	22.16
PGSC0003DMT400031731	Potato	cytosol, endoplasmic reticulum	29.63	15.35
PGSC0003DMT400051401	Potato	endoplasmic reticulum	28.24	14.7

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	EntrezGene:102603396	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
UniProt:M1ABL9	InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212
PFAM:PF09336	EnsemblPlantsGene:PGSC0003DMG401007403	PGSC:PGSC0003DMG401007403	EnsemblPlants:PGSC0003DMT400019113	ScanProsite:PS00674	PANTHER:PTHR23074
PANTHER:PTHR23074:SF137	SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540	UniParc:UPI00029605AE
InterPro:Vps4_C	RefSeq:XP_006349119.1	RefSeq:XP_015164956.1	SEG:seg	:	:

Description

Vacuolar protein sorting-associated protein VPS4 [Source:PGSC_GENE;Acc:PGSC0003DMG401007403]

Coordinates

chr11:-:40157350..40164223

Molecular Weight (calculated)

48151.0 Da

IEP (calculated)

6.807

GRAVY (calculated)

-0.560

Length

432 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EFVRQAVQED NGGNYAKAFP LYMNALEYFK THLKYEKNPK IKEAITQKFT EYLRRAEEIR AVLDEGGSGP GPNGGDAAVM AKPKTKPKDG
101: EDGEDPEQSK LRAGLNSAIV REKPNVKWND VAGLESAKQA LQEAVILPVK FPQFFTGKRR PWRAFLLYGP PGTGKSYLAK AVATEAESTF FSVSSSDLVS
201: KWMGESEKLV SNLFQMARES APSIIFVDEI DSLCGQRGEG NESEASRRIK TELLVQMQGV GHNDDKVLVL AATNTPYALD QAIRRRFDKR IYIPLPDLKA
301: RQHMFKVHLG DTPHNLSESD FEDLARKTEG FSGSDVSVCV KDVLFEPVRK TQDAVFFTQT SNGTWIPCGP KQQGAVQTTM QELDAKGLAS QIIPPPITKT
401: DFDKVLARQR PTVSKSDLEV HDRFTKEFGE EG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.