Factsheet for Solyc11g067240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019113	Potato	cytosol	98.61	98.61
Solyc11g067230.1.1	Tomato	cytosol	98.61	98.61
Solyc11g007170.1.1	Tomato	cytosol	81.25	86.88
Solyc11g013570.1.1	Tomato	cytosol	29.63	42.24
Solyc02g070440.2.1	Tomato	cytosol	33.33	37.31
Solyc11g013700.1.1	Tomato	cytosol	31.25	34.09
Solyc11g050800.1.1	Tomato	cytosol	24.31	33.33
Solyc01g094150.2.1	Tomato	nucleus	37.04	32.59
Solyc11g013650.1.1	Tomato	cytosol	25.0	30.68
Solyc06g066810.2.1	Tomato	cytosol	36.34	30.31
Solyc10g019190.1.1	Tomato	cytosol	23.15	28.17
Solyc08g083020.2.1	Tomato	plastid	23.38	28.13
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	24.31	27.85
Solyc11g050880.1.1	Tomato	cytosol	32.41	27.72
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	25.0	27.55
Solyc12g040520.1.1	Tomato	cytosol	33.1	26.93
Solyc02g094100.2.1	Tomato	nucleus	33.8	21.86
Solyc08g081740.2.1	Tomato	unclear	29.86	15.43
Solyc06g071980.2.1	Tomato	cytosol	26.39	15.0
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	27.78	14.53
Solyc02g014350.2.1	Tomato	mitochondrion	28.47	12.34
Solyc06g072000.1.1	Tomato	plastid	25.93	10.91
Solyc03g110900.2.1	Tomato	nucleus	29.17	10.54
Solyc09g074950.2.1	Tomato	plastid	28.01	9.78
Solyc06g084530.2.1	Tomato	extracellular, nucleus	28.24	9.75

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887
UniProt:K4D9Y1	InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212
PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SMART:SM00745
SUPFAM:SSF116846	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc11g067240.1	EnsemblPlants:Solyc11g067240.1.1	UniParc:UPI000276A472	InterPro:Vps4_C
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:52977165..52982403

Molecular Weight (calculated)

48079.9 Da

IEP (calculated)

6.806

GRAVY (calculated)

-0.550

Length

432 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVRQAVQED NGGNYAKAFP LYMNALEYFK THLKYEKNPK IKEAITQKFT EYLRRAEEIR AVLDEGGSGP GPNGGDAAVI AKPKTKPKDG
101: EDGEDPEQSK LRAGLNSAIV REKPNVKWND VAGLESAKQA LQEAVILPVK FPQFFTGKRR PWRAFLLYGP PGTGKSYLAK AVATEADSTF FSVSSSDLVS
201: KWMGESEKLV SNLFQMARES APSIIFVDEI DSLCGQRGEG NESEASRRIK TELLVQMQGV GHNDDKVLVL AATNTPYSLD QAIRRRFDKR IYIPLPDLKA
301: RQHMFKVHLG DTPHNLSESD FEDLARKTEG FSGSDVSVCV KDVLFEPVRK TQDAVFFTQT SNGTWIPCGP TQQGAVQTTM QELAAKGLAS QIIPPPITKT
401: DFDKVLARQR PTVSKSDLEV HDRFTKEFGE EG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.