Factsheet for Solyc11g050800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013570.1.1	Tomato	cytosol	53.97	56.11
Solyc11g013650.1.1	Tomato	cytosol	52.06	46.59
Solyc11g013700.1.1	Tomato	cytosol	57.46	45.71
Solyc11g050880.1.1	Tomato	cytosol	71.11	44.36
PGSC0003DMT400071442	Potato	cytosol	45.08	43.56
Solyc10g019190.1.1	Tomato	cytosol	48.57	43.1
Solyc12g040520.1.1	Tomato	cytosol	69.52	41.24
Solyc06g066810.2.1	Tomato	cytosol	55.24	33.59
Solyc02g070440.2.1	Tomato	cytosol	33.97	27.72
Solyc11g007170.1.1	Tomato	cytosol	33.97	26.49
Solyc11g067230.1.1	Tomato	cytosol	33.65	24.54
Solyc11g067240.1.1	Tomato	plastid	33.33	24.31
Solyc01g094150.2.1	Tomato	nucleus	31.43	20.16
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	20.63	17.24
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	21.27	17.09
Solyc08g083020.2.1	Tomato	plastid	19.05	16.71
Solyc02g094100.2.1	Tomato	nucleus	32.38	15.27
Solyc06g071980.2.1	Tomato	cytosol	27.3	11.32
Solyc08g081740.2.1	Tomato	unclear	29.52	11.12
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	28.89	11.02
Solyc06g072000.1.1	Tomato	plastid	26.98	8.28
Solyc02g014350.2.1	Tomato	mitochondrion	26.03	8.22
Solyc03g110900.2.1	Tomato	nucleus	27.62	7.28
Solyc06g084530.2.1	Tomato	extracellular, nucleus	27.94	7.03
Solyc09g074950.2.1	Tomato	plastid	27.62	7.03

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0016787	GO:GO:0016887	UniProt:K4D8P3	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF09336	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc11g050800.1	EnsemblPlants:Solyc11g050800.1.1
UniParc:UPI000276A90A	InterPro:Vps4_C	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:16192069..16194635

Molecular Weight (calculated)

35236.8 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.570

Length

315 amino acids

Sequence
(BLAST)

001: METPRSSGTN TSSTFDSTLR EHLLILLSGG ELNSTAQVNN NVNSAQQEND VKDIESKKVK YNGSHPELAA RLEKETLYTN PGFDYNDVAG LSDAKRILQE
101: TLGIGRPWRG VLMFGPPGTG KTLLAKDVAT ECGMTFMNIS CSSLCGKSYG ESERLTRCLF ELAREHETSR RIKSELLVHT DGLNNSNSTS GNISDTFDES
201: TILRRLEKRI YIPLPYFETC KELIRINLKP IEHKKAEGYS GDDLTNICRD ASFSGMRRKI AGKTIDEIKN ILKSEMLKIP MTMENFLETV DKIKPTVSSG
301: DIQQHEKWYS EFGSS

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.