Factsheet for Solyc10g019190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g040520.1.1	Tomato	cytosol	85.35	57.06
Solyc11g050880.1.1	Tomato	cytosol	79.44	55.84
Solyc11g013570.1.1	Tomato	cytosol	43.66	51.16
Solyc11g050800.1.1	Tomato	cytosol	43.1	48.57
Solyc11g013700.1.1	Tomato	cytosol	50.99	45.71
PGSC0003DMT400071442	Potato	cytosol	40.0	43.56
Solyc11g013650.1.1	Tomato	cytosol	40.28	40.62
Solyc06g066810.2.1	Tomato	cytosol	47.61	32.63
Solyc02g070440.2.1	Tomato	cytosol	30.42	27.98
Solyc11g007170.1.1	Tomato	cytosol	27.89	24.5
Solyc11g067230.1.1	Tomato	cytosol	28.45	23.38
Solyc11g067240.1.1	Tomato	plastid	28.17	23.15
Solyc01g094150.2.1	Tomato	nucleus	29.3	21.18
Solyc08g083020.2.1	Tomato	plastid	19.44	19.22
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	20.0	18.83
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	20.56	18.62
Solyc02g094100.2.1	Tomato	nucleus	28.73	15.27
Solyc06g071980.2.1	Tomato	cytosol	26.48	12.37
Solyc08g081740.2.1	Tomato	unclear	27.04	11.48
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	25.63	11.02
Solyc06g072000.1.1	Tomato	plastid	26.48	9.15
Solyc02g014350.2.1	Tomato	mitochondrion	24.79	8.83
Solyc03g110900.2.1	Tomato	nucleus	28.73	8.54
Solyc09g074950.2.1	Tomato	plastid	28.73	8.25
Solyc06g084530.2.1	Tomato	extracellular, nucleus	28.73	8.15

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887	UniProt:K4CZ37	InterPro:P-loop_NTPase
PFAM:PF00004	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g019190.1
EnsemblPlants:Solyc10g019190.1.1	UniParc:UPI000276AB9D	:	:	:	:

Description

No Description!

Coordinates

chr10:+:12283852..12288034

Molecular Weight (calculated)

39008.7 Da

IEP (calculated)

6.256

GRAVY (calculated)

-0.218

Length

355 amino acids

Sequence
(BLAST)

001: MVGVDAMAVE PTLSNDLQRL PFLLQIYLGN PSFLAGSKGL SYSGFTHIYE EGHLNFDHDF NTINIQPPIH QGGGISSAGS VSNIGIRTQQ MGGVISSAVQ
101: VNSYGNTMQQ VRGNLNSAAE VNKNVNSAEQ EGIRRPWRGV LLFGPPGKGK TLLAKAVATE CGMTFMNISC SSLCGNWYGE SERLTWCLFK LARAHAPTMI
201: FIDDIDSLCS VRGSATEHET SRRLMAELLV QIDGLNNSNS TSGKMVTLLA ATNFPGNLDE ELSRLEKWIY IPLPDFETRK ELIQINLKSI ELAPEVDIEQ
301: VAQKTKGYSG DDLTNICRDA SLNGMRQKIA GKTIDEIKNI LKSEMLKFQL QWKTS

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.