Factsheet for Solyc11g007170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g069370.2.1
Solyc07g064980.2.1
Solyc11g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	Solyc11g008430.1.1	AT3G54840.1	17468262
AT2G27600.1	Solyc02g069370.2.1	AT4G19640.1	17468262
AT2G27600.1	Solyc07g064980.2.1	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050194	Potato	cytosol	99.75	92.64
Os01t0141100-02	Rice	cytosol, plasma membrane	65.35	87.13
Solyc11g067240.1.1	Tomato	plastid	86.88	81.25
GSMUA_Achr2P22550_001	Banana	cytosol	82.67	81.07
CDY31186	Canola	cytosol	86.88	80.88
CDX83275	Canola	cytosol	86.63	80.83
Solyc11g067230.1.1	Tomato	cytosol	86.39	80.79
CDX71438	Canola	cytosol	85.64	80.65
Bra000503.1-P	Field mustard	cytosol	86.39	80.6
KRH26619	Soybean	nucleus	86.88	80.5
KRH25197	Soybean	cytosol	86.39	80.41
KRH30451	Soybean	cytosol	86.39	80.41
GSMUA_Achr4P24320_001	Banana	cytosol	81.19	80.39
CDX93578	Canola	cytosol	85.4	80.23
CDY04504	Canola	cytosol	85.64	80.09
Bra018640.1-P	Field mustard	cytosol	85.15	80.0
VIT_13s0106g00490.t01	Wine grape	cytosol	85.89	79.95
KRH22691	Soybean	cytosol	80.69	79.71
Bra012009.1-P	Field mustard	cytosol	85.4	79.68
EES00346	Sorghum	cytosol	85.89	79.59
CDX95077	Canola	cytosol	84.9	79.58
GSMUA_Achr3P01430_001	Banana	cytosol	80.69	79.32
AT2G27600.1	Thale cress	cytosol	85.15	79.08
Zm00001d039904_P006	Maize	cytosol	85.15	79.08
TraesCS3D01G053600.1	Wheat	cytosol	84.16	77.63
TraesCS3A01G054100.1	Wheat	cytosol	83.91	77.4
TraesCS3B01G065200.1	Wheat	cytosol	83.66	77.17
Zm00001d008596_P005	Maize	cytosol	84.9	75.38
Os02t0159900-01	Rice	plasma membrane	73.02	68.13
TraesCS6D01G122900.1	Wheat	cytosol	73.27	67.73
TraesCS6B01G161700.1	Wheat	cytosol	73.27	67.73
TraesCS6A01G133300.1	Wheat	cytosol	72.77	67.12
Os01t0141300-00	Rice	cytosol	70.79	59.83
HORVU3Hr1G010300.1	Barley	cytosol, plastid	74.26	57.25
Solyc11g013570.1.1	Tomato	cytosol	32.18	42.9
Solyc02g070440.2.1	Tomato	cytosol	34.65	36.27
Solyc11g013700.1.1	Tomato	cytosol	33.42	34.09
Solyc11g050800.1.1	Tomato	cytosol	26.49	33.97
Solyc11g013650.1.1	Tomato	cytosol	27.72	31.82
Solyc01g094150.2.1	Tomato	nucleus	36.88	30.35
Solyc06g066810.2.1	Tomato	cytosol	38.37	29.92
Solyc08g083020.2.1	Tomato	plastid	25.25	28.41
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	26.49	28.38
Solyc11g050880.1.1	Tomato	cytosol	35.15	28.12
Solyc10g019190.1.1	Tomato	cytosol	24.5	27.89
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	26.24	27.04
Solyc12g040520.1.1	Tomato	cytosol	35.15	26.74
Solyc02g094100.2.1	Tomato	nucleus	33.17	20.06
Solyc08g081740.2.1	Tomato	unclear	31.19	15.07
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	29.46	14.41
Solyc06g071980.2.1	Tomato	cytosol	26.73	14.21
Solyc02g014350.2.1	Tomato	mitochondrion	29.21	11.84
Solyc06g072000.1.1	Tomato	plastid	26.24	10.32
Solyc03g110900.2.1	Tomato	nucleus	28.96	9.79
Solyc06g084530.2.1	Tomato	extracellular, nucleus	29.95	9.67
Solyc09g074950.2.1	Tomato	plastid	28.96	9.46

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887
UniProt:K4D4X8	InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212
PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SUPFAM:SSF116846
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc11g007170.1	EnsemblPlants:Solyc11g007170.1.1	UniParc:UPI000276A271	InterPro:Vps4_C	SEG:seg

Description

No Description!

Coordinates

chr11:-:1602611..1607254

Molecular Weight (calculated)

44769.2 Da

IEP (calculated)

8.429

GRAVY (calculated)

-0.524

Length

404 amino acids

Sequence
(BLAST)

001: MNALEYFKTH LKYEKNPKIK EAITQKFVEY LRRAEEIRSV LDEGGGGPTS NGDAAVASRA KSKPKNGGGG GGEGDDSENV KLRAGLNSAI VREKPNVKWN
101: DVAGLESAKQ ALQEAVILPV KFPQFFTGKR RPWRAFLLYG PPGTGKSYLA KAVATEADST FFSVSSSDLV SKWMGESEKL VSNLFQMARE SSPSIVFIDE
201: IDSLCGQRGE GSESEASRRI KTELLVQMQG VGHDDDKKVL VLAATNTPYS LDQAIRRRFD KRIYIPLPDL KARQHMFKVH LGDTPHNLTE SDFEQLARKT
301: EGFSGSDISV CVNEVLFEPV RKTQDAEFFI KTSDGLWVPC GPRQPGAIQT NMQELAAKGL ASKITPPPIS IRDFDRVLWK QKPTVSKADL EVHERFTKEF
401: GEEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.