Factsheet for Solyc02g069370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g065330.2.1
Solyc11g007170.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19640.1	Solyc11g007170.1.1	AT2G27600.1	17468262
AT4G19640.1	Solyc08g065330.2.1	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13065	Canola	cytosol	87.0	87.0
CDY23153	Canola	cytosol	86.5	86.5
CDX82579	Canola	cytosol	86.0	86.0
Bra027593.1-P	Field mustard	cytosol	85.5	85.93
CDY39412	Canola	cytosol	85.5	85.5
Bra025091.1-P	Field mustard	cytosol	85.5	85.5
Bra013410.1-P	Field mustard	cytosol	84.5	84.5
AT4G19640.1	Thale cress	cytosol	83.5	83.5
CDX99356	Canola	cytosol	83.5	83.08
CDX78949	Canola	cytosol	83.5	83.08
Os03t0666500-01	Rice	plasma membrane	82.5	81.28
Solyc02g036450.2.1	Tomato	cytosol, plastid	81.0	81.0
Os12t0631100-01	Rice	plasma membrane	82.0	80.79
TraesCS4B01G019100.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.5	80.49
TraesCS4A01G294600.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.5	80.49
EER93694	Sorghum	cytosol	81.5	80.3
Zm00001d013583_P001	Maize	cytosol	81.0	79.8
Solyc02g081380.2.1	Tomato	plastid	79.5	79.5
HORVU5Hr1G002970.1	Barley	plastid	83.0	79.43
GSMUA_Achr7P16440_001	Banana	cytosol	80.0	79.21
Zm00001d031179_P001	Maize	extracellular, mitochondrion	80.5	78.92
KXG24102	Sorghum	cytosol	80.5	78.92
TraesCS5D01G022200.2	Wheat	golgi	82.0	78.47
AT5G45130.2	Thale cress	endoplasmic reticulum	81.5	78.37
GSMUA_Achr9P10010_001	Banana	cytosol	80.0	78.05
TraesCS5B01G014400.1	Wheat	plastid	81.5	77.99
TraesCS4D01G017300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.5	76.74
GSMUA_Achr6P31600_001	Banana	cytosol	70.5	69.12
HORVU4Hr1G002980.2	Barley	cytosol	82.5	69.04
Zm00001d034949_P001	Maize	extracellular, mitochondrion	80.5	64.92
CDX78945	Canola	cytosol	16.5	64.71
CDY09323	Canola	extracellular, plastid, vacuole	32.0	56.14
Solyc11g008430.1.1	Tomato	cytosol	54.5	54.5
Solyc01g088560.2.1	Tomato	plastid	39.5	37.98
Solyc03g078570.2.1	Tomato	cytosol	38.0	36.72
Solyc05g051570.2.1	Tomato	nucleus	38.0	36.72

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0016787	GO:GO:0030139	UniProt:K4B7R9	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF622	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc02g069370.2
EnsemblPlants:Solyc02g069370.2.1	TIGRFAMs:TIGR00231	UniParc:UPI00027680B9	:	:	:

Description

No Description!

Coordinates

chr2:-:39281375..39289536

Molecular Weight (calculated)

21656.7 Da

IEP (calculated)

5.959

GRAVY (calculated)

-0.155

Length

200 amino acids

Sequence
(BLAST)

001: MATSGNKNMN AKLVLLGDVG AGKSSLVLRF VKGQFIEFQE STIGAAFFSQ TVAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVY DITNQASFDR
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVAAEEAQT YAEENGLFFM ETSAKTASNV NDVFSEIAKR LPRLQPAQNP SGMVLMDRPA QTPASASCCS

Best Arabidopsis Sequence Match ( AT5G45130.1 )
(BLAST)

001: MASSGNKNIN AKLVLLGDVG AGKSSLVLRF VKDQFVEFQE STIGAAFFSQ TLAVNDATVK FEIWDTAGQE RYHSLAPMYY RGAAAAIIVF DITNQASFER
101: AKKWVQELQA QGNPNMVMAL AGNKADLLDA RKVSAEEAEI YAQENSLFFM ETSAKTATNV KDIFYEIAKR LPRVQPAENP TGMVLPNGPG ATAVSSSCCA

Arabidopsis Description

ATRAB5ARAB homolog 1 [Source:TAIR;Acc:AT5G45130]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.