Factsheet for Solyc05g051570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
golgi 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018619	Potato	cytosol	99.52	99.52
Solyc03g078570.2.1	Tomato	cytosol	91.79	91.79
EER97564	Sorghum	cytosol	90.34	89.47
Zm00001d006905_P001	Maize	mitochondrion	90.34	89.47
Solyc01g088560.2.1	Tomato	plastid	89.86	89.42
GSMUA_Achr6P10400_001	Banana	cytosol	89.37	89.37
GSMUA_Achr2P22200_001	Banana	cytosol	88.89	88.89
Os03t0191400-01	Rice	plasma membrane	81.64	78.6
KXG39985	Sorghum	cytosol	79.23	77.0
TraesCS4D01G305100.1	Wheat	cytosol	78.74	76.17
TraesCS4A01G407500.1	Wheat	cytosol	78.26	75.7
TraesCS4B01G306900.1	Wheat	cytosol	77.78	75.23
Zm00001d028012_P001	Maize	cytosol, extracellular	66.67	62.16
HORVU4Hr1G078690.2	Barley	plastid	77.78	52.44
Solyc11g008430.1.1	Tomato	cytosol	37.2	38.5
Solyc02g069370.2.1	Tomato	plastid	36.72	38.0
Solyc02g081380.2.1	Tomato	plastid	35.75	37.0
Solyc02g036450.2.1	Tomato	cytosol, plastid	35.75	37.0

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005829	GO:GO:0006810	GO:GO:0006890	GO:GO:0006891	GO:GO:0008150
GO:GO:0016787	GO:GO:0042147	UniProt:K4C1I8	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF630	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc05g051570.2	EnsemblPlants:Solyc05g051570.2.1
TIGRFAMs:TIGR00231	UniParc:UPI00027656F6	:	:	:	:

Description

No Description!

Coordinates

chr5:-:61938794..61942841

Molecular Weight (calculated)

23088.7 Da

IEP (calculated)

6.735

GRAVY (calculated)

-0.169

Length

207 amino acids

Sequence
(BLAST)

001: MAAVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVFD VANRQSFLNT
101: SKWIEEVRTE RGTDVIIVLV GNKTDLVEKR QVSIEEGESK AREFNVMFIE TSAKAGFNIK PLFRKIAAAL PGMEALSSTK QEDMVDVNLK PTTSSSNAEQ
201: QGGGCAC

Best Arabidopsis Sequence Match ( AT5G10260.1 )
(BLAST)

001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWIEDVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGDNK ARDYGVIFIE TSAKAGFNIK PLFRKIAAAL PGMETLSSTK QEDMVDVNLK TSSNSAQGEQ
201: QRGGCAC

Arabidopsis Description

RABH1ERABH1e [Source:UniProtKB/TrEMBL;Acc:A0A178UPG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.