Factsheet for Os03t0191400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 5
mitochondrion 1
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 24083427
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G305100.1	Wheat	cytosol	87.44	87.85
TraesCS4A01G407500.1	Wheat	cytosol	87.44	87.85
KXG39985	Sorghum	cytosol	86.98	87.79
TraesCS4B01G306900.1	Wheat	cytosol	86.98	87.38
GSMUA_Achr2P22200_001	Banana	cytosol	82.33	85.51
Os07t0496000-01	Rice	plasma membrane	79.53	82.21
KRH59334	Soybean	endoplasmic reticulum	79.07	82.13
GSMUA_Achr6P10400_001	Banana	cytosol	79.07	82.13
Solyc05g051570.2.1	Tomato	nucleus	78.6	81.64
Solyc03g078570.2.1	Tomato	cytosol	78.6	81.64
PGSC0003DMT400056111	Potato	cytosol	78.6	81.64
PGSC0003DMT400018619	Potato	cytosol	78.6	81.64
KRH43179	Soybean	cytosol	78.6	81.64
AT5G10260.1	Thale cress	cytosol	78.14	81.16
KRG97576	Soybean	cytosol	78.14	81.16
KRH31293	Soybean	cytosol	66.98	80.9
VIT_00s0665g00040.t01	Wine grape	extracellular	66.51	80.34
CDY13772	Canola	cytosol	75.35	78.26
AT2G22290.1	Thale cress	cytosol	75.35	78.26
Bra006054.1-P	Field mustard	cytosol	75.35	78.26
CDX81166	Canola	cytosol	75.35	78.26
Bra038535.1-P	Field mustard	cytosol	75.35	78.26
CDX78373	Canola	cytosol	75.35	78.26
CDX96987	Canola	cytosol	74.88	78.16
Bra009046.1-P	Field mustard	cytosol	74.88	78.16
CDX69850	Canola	cytosol	74.88	78.16
Zm00001d028012_P001	Maize	cytosol, extracellular	74.88	72.52
HORVU4Hr1G078690.2	Barley	plastid	86.51	60.59
CDX76936	Canola	cytosol	72.56	56.73
Os12t0631100-01	Rice	plasma membrane	36.28	38.42
Os03t0666500-01	Rice	plasma membrane	36.28	38.42
Os03t0151900-01	Rice	plasma membrane	34.88	37.69
Os06t0687100-01	Rice	cytosol	32.56	35.0
Os05t0341600-01	Rice	cytosol, plastid	33.02	33.49
Os10t0441800-01	Rice	plasma membrane	34.88	30.0

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	ProteinID:ABF94402.1	ProteinID:BAS82720.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0006810	GO:GO:0006890
GO:GO:0006891	GO:GO:0008150	GO:GO:0016787	GO:GO:0042147	EnsemblPlantsGene:Os03g0191400	EnsemblPlants:Os03t0191400-01
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF630
UniProt:Q10QM5	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0000DB489E	:	:

Description

small GTP-binding protein OsRab6B2Small GTPase, Regulation of iron homeostasis (Os03t0191400-01)

Coordinates

chr3:+:4763790..4766335

Molecular Weight (calculated)

23544.2 Da

IEP (calculated)

5.396

GRAVY (calculated)

-0.130

Length

215 amino acids

Sequence
(BLAST)

001: MAPVVSALAK YKLVFLGDQA VGKTAIITRF MYDKFDATYQ ATIGIDFLSK TMYLEDRTVR LQLWDTAGQE RFRSLIPSYI RDSSVAVIVY DVTGKQSFLS
101: ISKWIEEVNT QRGGDVIIVL VGNKTDLVDK RQISTDEGEA KAQEHGAMFM ETSAKAGFNI KPLFRKIAAS LPGMEALSSA KQEDMVDINL RPAASGQIPS
201: GAEAQEEQKA GGCSC

Best Arabidopsis Sequence Match ( AT5G10260.1 )
(BLAST)

001: MASVSPLAKY KLVFLGDQSV GKTSIITRFM YDKFDTTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VANRQSFLNT
101: SKWIEDVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGDNK ARDYGVIFIE TSAKAGFNIK PLFRKIAAAL PGMETLSSTK QEDMVDVNLK TSSNSAQGEQ
201: QRGGCAC

Arabidopsis Description

RABH1ERABH1e [Source:UniProtKB/TrEMBL;Acc:A0A178UPG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.