Factsheet for Os06t0687100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20675	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.5	80.5
TraesCS7D01G433800.1	Wheat	cytosol	79.5	76.44
TraesCS7B01G345100.1	Wheat	cytosol	79.0	76.33
HORVU1Hr1G013720.3	Barley	cytosol, mitochondrion, nucleus	73.5	72.41
HORVU7Hr1G101140.7	Barley	mitochondrion	74.5	68.66
HORVU2Hr1G027490.2	Barley	cytosol, mitochondrion, nucleus	62.0	65.96
VIT_11s0016g04020.t01	Wine grape	cytosol	57.0	65.9
GSMUA_Achr6P02970_001	Banana	cytosol	63.0	63.0
KRH41580	Soybean	cytosol	60.5	62.37
KRH60288	Soybean	mitochondrion	62.0	62.31
VIT_09s0002g04600.t01	Wine grape	cytosol	62.0	62.31
KRH23467	Soybean	cytosol	33.5	59.82
GSMUA_Achr5P23540_001	Banana	endoplasmic reticulum	69.0	59.48
KRH09851	Soybean	cytosol, mitochondrion, plastid	58.0	58.0
Os03t0666500-01	Rice	plasma membrane	57.5	56.65
Os12t0631100-01	Rice	plasma membrane	56.0	55.17
Os03t0151900-01	Rice	plasma membrane	46.5	46.73
Os10t0441800-01	Rice	plasma membrane	47.5	38.0
Os05t0341600-01	Rice	cytosol, plastid	37.0	34.91
Os07t0496000-01	Rice	plasma membrane	35.5	34.13
Os03t0191400-01	Rice	plasma membrane	35.0	32.56

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	EntrezGene:4341888	EMBL:AK242104	UniProt:B7F994	ProteinID:BAS99199.1
ProteinID:EEE66242.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0016787	GO:GO:0030139	EnsemblPlantsGene:Os06g0687100	EnsemblPlants:Os06t0687100-01	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF683	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI000188B02F	RefSeq:XP_015643364.1	SEG:seg	:	:	:

Description

small GTP-binding protein OsRab5C1Similar to predicted protein. (Os06t0687100-01)

Coordinates

chr6:+:28651070..28652594

Molecular Weight (calculated)

22658.0 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.313

Length

200 amino acids

Sequence
(BLAST)

001: MLSRPSWWVL LGDLGAGKTS IVVRFAKGLY YDCQESTIGA AFFSQVLIMD EATVKLDIWD TAGQERYHSL APMYYRGAAA AVVVYDISST DSYIRARKWV
101: DELQRQGNPH LVMALVGNKV DLEEKRQVGT QEAMEYAERN GLFFIETSAK TSQNVTELFY ELADRLVKVR PHRPSGMVLH DGRRRRDDGG GWPWRLCCSG

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.