Factsheet for GSMUA_Achr6P02970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P23540_001	Banana	endoplasmic reticulum	88.0	75.86
VIT_09s0002g04600.t01	Wine grape	cytosol	73.0	73.37
KRH09851	Soybean	cytosol, mitochondrion, plastid	72.0	72.0
KRH23467	Soybean	cytosol	39.5	70.54
GSMUA_AchrUn_...	Banana	cytosol	48.0	66.67
KXG20675	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.5	66.5
TraesCS7B01G345100.1	Wheat	cytosol	66.0	63.77
TraesCS7D01G433800.1	Wheat	cytosol	66.0	63.46
Os06t0687100-01	Rice	cytosol	63.0	63.0
GSMUA_Achr7P16440_001	Banana	cytosol	61.5	60.89
GSMUA_Achr9P10010_001	Banana	cytosol	61.0	59.51
GSMUA_Achr1P03160_001	Banana	cytosol	50.0	56.82
HORVU1Hr1G013720.3	Barley	cytosol, mitochondrion, nucleus	57.0	56.16
HORVU2Hr1G027490.2	Barley	cytosol, mitochondrion, nucleus	52.0	55.32
GSMUA_Achr2P10990_001	Banana	cytosol	66.5	55.19
GSMUA_Achr4P29680_001	Banana	cytosol	64.0	54.7
GSMUA_Achr1P02060_001	Banana	cytosol	64.5	53.97
GSMUA_Achr6P31600_001	Banana	cytosol	54.5	53.43
HORVU7Hr1G101140.7	Barley	mitochondrion	57.5	53.0
GSMUA_Achr5P10670_001	Banana	cytosol	45.0	46.63
GSMUA_Achr4P29310_001	Banana	plastid	50.0	45.66
GSMUA_AchrUn_...	Banana	cytosol	19.0	40.86
GSMUA_Achr2P22200_001	Banana	cytosol	41.0	39.61
GSMUA_AchrUn_...	Banana	cytosol	40.5	38.94
GSMUA_Achr5P12680_001	Banana	plasma membrane	40.0	38.46
GSMUA_Achr6P10400_001	Banana	cytosol	39.5	38.16
GSMUA_Achr11P...	Banana	mitochondrion	39.0	37.68
GSMUA_Achr1P00610_001	Banana	cytosol	33.0	36.87
GSMUA_Achr6P32620_001	Banana	mitochondrion	32.5	33.85

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G02970_001	EnsemblPlants:GSMUA_Achr6P02970_001	EnsemblPlants:GSMUA_Achr6T02970_001
UniProt:M0T3P5	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF825	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002949F0A	:

Description

Ras-related protein RHN1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G02970_001]

Coordinates

chr6:+:2046682..2051001

Molecular Weight (calculated)

22526.0 Da

IEP (calculated)

8.973

GRAVY (calculated)

-0.270

Length

200 amino acids

Sequence
(BLAST)

001: MARMGSNNIQ AKLVLLGDMG TGKTSIVLRF VKGQYFDSQE STIGAAFFSQ VLSLNEGIVK FDIWDTAGQE RYRSLVPMYY HGAAAAIIVY DISNMDSYVR
101: AKKWVRELQR QGNPYLILAL VGNKIDLEAK RKVESEEGLQ YAQENGLFFI ETSAKTAENI NELFYEIAKR LAKARPPQSS GMNLSNETQV RERRLFCCSG

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.