CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23467	Soybean	cytosol	52.0	92.86
VIT_09s0002g04600.t01	Wine grape	cytosol	77.0	77.39
GSMUA_Achr6P02970_001	Banana	cytosol	72.0	72.0
KRH60288	Soybean	mitochondrion	67.5	67.84
GSMUA_Achr5P23540_001	Banana	endoplasmic reticulum	77.5	66.81
KRH41580	Soybean	cytosol	64.0	65.98
KRG98019	Soybean	cytosol	65.0	65.0
KXG20675	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.5	63.5
TraesCS7B01G345100.1	Wheat	cytosol	62.0	59.9
Os06t0687100-01	Rice	cytosol	58.0	58.0
TraesCS7D01G433800.1	Wheat	cytosol	60.0	57.69
KRH20053	Soybean	endoplasmic reticulum	65.0	55.79
HORVU1Hr1G013720.3	Barley	cytosol, mitochondrion, nucleus	54.5	53.69
HORVU2Hr1G027490.2	Barley	cytosol, mitochondrion, nucleus	49.5	52.66
KRG91957	Soybean	cytosol	51.5	51.5
HORVU7Hr1G101140.7	Barley	mitochondrion	53.5	49.31
KRH34819	Soybean	cytosol	49.5	48.29
KRH77258	Soybean	endoplasmic reticulum	40.0	38.65
KRH28235	Soybean	cytosol	40.0	38.65
KRH57563	Soybean	cytosol	39.5	38.35
KRH04283	Soybean	cytosol	39.5	38.35
KRG97576	Soybean	cytosol	39.5	38.16
KRH43179	Soybean	cytosol	39.0	37.68
KRH59334	Soybean	endoplasmic reticulum	39.0	37.68
KRH31293	Soybean	cytosol	31.0	34.83
KRH77257	Soybean	endoplasmic reticulum	30.0	34.09
KRH28236	Soybean	cytosol	21.0	8.86

Protein Annotations

EntrezGene:100788883	MapMan:22.8.1.6	Gene3D:3.40.50.300	EMBL:ACUP02009112	EnsemblPlantsGene:GLYMA_15G014700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787	GO:GO:0030139
UniProt:I1MCN5	EnsemblPlants:KRH09851	ProteinID:KRH09851	ProteinID:KRH09851.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF825	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI000233BFC3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:1175720..1179255

Molecular Weight (calculated)

22309.7 Da

IEP (calculated)

8.193

GRAVY (calculated)

-0.271

Length

200 amino acids

Sequence
(BLAST)

001: MARPGNKIIQ AKLVLLGDMG TGKTSIALRF VKGHFFPNQE PTIGAAFFTQ ILSLSEATVK FDIWDTAGQE RYHSLAPMYY RGAAAAIVVY DISSVDTFVR
101: AKKWVQELQT HGNQKSVMAL VANKSDLEPK REVEAEVGEQ FAQENGMFYM ETSAKTAENI NELFYEIAKR LARALPPKPT GMNLNSDIQD RGRNYFCCSA

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.