CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
golgi 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28235	Soybean	cytosol	98.55	98.55
Solyc01g088560.2.1	Tomato	plastid	95.17	94.71
PGSC0003DMT400004322	Potato	cytosol	94.69	94.23
VIT_02s0012g00710.t01	Wine grape	cytosol	80.68	93.3
KRH57563	Soybean	cytosol	91.79	92.23
KRH04283	Soybean	cytosol	91.79	92.23
HORVU2Hr1G050270.2	Barley	cytosol	92.27	91.83
TraesCS2A01G236600.1	Wheat	cytosol	92.27	91.83
TraesCS2B01G261200.1	Wheat	cytosol	92.27	91.83
TraesCS2D01G234600.1	Wheat	plastid	92.27	91.83
GSMUA_AchrUn_...	Banana	cytosol	92.27	91.83
Os07t0496000-01	Rice	plasma membrane	92.27	91.83
Zm00001d006433_P001	Maize	plasma membrane	91.79	91.35
GSMUA_Achr5P12680_001	Banana	plasma membrane	91.79	91.35
EER97251	Sorghum	cytosol	91.79	91.35
GSMUA_Achr1P00610_001	Banana	cytosol	78.26	90.5
KRG97576	Soybean	cytosol	87.92	87.92
KRH43179	Soybean	cytosol	87.92	87.92
KRH59334	Soybean	endoplasmic reticulum	87.92	87.92
KRH31293	Soybean	cytosol	75.36	87.64
KRH77257	Soybean	endoplasmic reticulum	66.18	77.84
Zm00001d021551_P002	Maize	cytosol	91.3	74.41
AT5G64990.2	Thale cress	cytosol	74.88	72.77
CDX81264	Canola	cytosol	71.5	72.55
Bra037802.1-P	Field mustard	cytosol	66.67	70.05
CDY18689	Canola	cytosol	71.98	68.66
KRG91957	Soybean	cytosol	39.61	41.0
KRH23467	Soybean	cytosol	21.74	40.18
KRH09851	Soybean	cytosol, mitochondrion, plastid	38.65	40.0
KRH34819	Soybean	cytosol	39.13	39.51
KRH60288	Soybean	mitochondrion	37.2	38.69
KRG98019	Soybean	cytosol	36.72	38.0
KRH41580	Soybean	cytosol	34.78	37.11
KRH20053	Soybean	endoplasmic reticulum	36.72	32.62
Zm00001d024612_P011	Maize	mitochondrion	38.16	27.43
KRH28236	Soybean	cytosol	61.35	26.79

Protein Annotations

EntrezGene:100794537	MapMan:22.8.1.8	Gene3D:3.40.50.300	EMBL:ACUP02000668	EnsemblPlantsGene:GLYMA_01G202500	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0006810
GO:GO:0006890	GO:GO:0006891	GO:GO:0008150	GO:GO:0016787	GO:GO:0042147	UniProt:I1J9N4
EnsemblPlants:KRH77258	ProteinID:KRH77258	ProteinID:KRH77258.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF840	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00023372EE

Description

hypothetical protein

Coordinates

chr1:-:53518552..53522189

Molecular Weight (calculated)

23010.6 Da

IEP (calculated)

8.164

GRAVY (calculated)

-0.135

Length

207 amino acids

Sequence
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQTFLNT
101: AKWIEEVRTE RGSDVIIVLV GNKTDLVEKR QVSIEEGEAK ARELNVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSAK QEDMVDVNLK STTGSAQSQP
201: QPSGCAC

Best Arabidopsis Sequence Match ( AT2G44610.1 )
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: TKWIDEVRTE RGSDVIVVLV GNKTDLVDKR QVSIEEAEAK ARELNVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSTK QEDMVDVNLK SSNANASLAQ
201: QQSGGCSC

Arabidopsis Description

RABH1BRas-related protein RABH1b [Source:UniProtKB/Swiss-Prot;Acc:O80501]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.