Factsheet for Os07t0496000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
golgi 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G236600.1	Wheat	cytosol	100.0	100.0
TraesCS2B01G261200.1	Wheat	cytosol	100.0	100.0
TraesCS2D01G234600.1	Wheat	plastid	100.0	100.0
HORVU2Hr1G050270.2	Barley	cytosol	100.0	100.0
Zm00001d006433_P001	Maize	plasma membrane	99.04	99.04
EER97251	Sorghum	cytosol	99.04	99.04
VIT_15s0021g00640.t01	Wine grape	cytosol	82.21	95.53
GSMUA_AchrUn_...	Banana	cytosol	94.71	94.71
PGSC0003DMT400004322	Potato	cytosol	94.23	94.23
Solyc01g088560.2.1	Tomato	plastid	94.23	94.23
GSMUA_Achr5P12680_001	Banana	plasma membrane	93.75	93.75
GSMUA_Achr1P00610_001	Banana	cytosol	80.29	93.3
VIT_02s0012g00710.t01	Wine grape	cytosol	80.29	93.3
CDY30479	Canola	cytosol	92.79	92.79
AT2G44610.1	Thale cress	cytosol	92.79	92.79
Bra037641.1-P	Field mustard	cytosol	92.79	92.79
CDX74672	Canola	cytosol	92.79	92.79
CDX83425	Canola	cytosol	92.79	92.79
CDX95606	Canola	cytosol	92.79	92.79
CDY48241	Canola	cytosol	92.79	92.79
Bra004850.1-P	Field mustard	cytosol	92.31	92.31
KRH77258	Soybean	endoplasmic reticulum	91.83	92.27
Bra000355.1-P	Field mustard	cytosol	91.83	91.83
KRH28235	Soybean	cytosol	91.35	91.79
KRH04283	Soybean	cytosol	89.9	90.78
KRH57563	Soybean	cytosol	89.9	90.78
Zm00001d021551_P002	Maize	cytosol	98.56	80.71
Os03t0191400-01	Rice	plasma membrane	82.21	79.53
KRH77257	Soybean	endoplasmic reticulum	63.94	75.57
CDX81264	Canola	cytosol	72.6	74.02
AT5G64990.2	Thale cress	cytosol	75.0	73.24
Bra037802.1-P	Field mustard	cytosol	68.27	72.08
CDY18689	Canola	cytosol	73.08	70.05
VIT_02s0012g00790.t01	Wine grape	cytosol	29.81	53.45
Os03t0151900-01	Rice	plasma membrane	37.02	38.69
Os03t0666500-01	Rice	plasma membrane	36.54	37.44
Os12t0631100-01	Rice	plasma membrane	36.06	36.95
Os06t0687100-01	Rice	cytosol	34.13	35.5
CDY23446	Canola	cytosol	92.31	31.95
Os10t0441800-01	Rice	plasma membrane	37.02	30.8
Os05t0341600-01	Rice	cytosol, plastid	31.25	30.66
KRH28236	Soybean	cytosol	59.13	25.95

Protein Annotations

MapMan:22.8.1.8	Gene3D:3.40.50.300	EntrezGene:4343293	ProteinID:BAC21376.1	ProteinID:BAF21613.1	ProteinID:BAT01600.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829
GO:GO:0006810	GO:GO:0006890	GO:GO:0006891	GO:GO:0008150	GO:GO:0016787	GO:GO:0042147
EnsemblPlantsGene:Os07g0496000	EnsemblPlants:Os07t0496000-01	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF840	UniProt:Q8H4Q9	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00000AD67E
RefSeq:XP_015647728.1	SEG:seg	:	:	:	:

Description

small GTP-binding protein OsRab6A1Similar to Nt-rab6 protein. (Os07t0496000-01)

Coordinates

chr7:-:18578895..18582768

Molecular Weight (calculated)

22946.5 Da

IEP (calculated)

8.170

GRAVY (calculated)

-0.131

Length

208 amino acids

Sequence
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVFD VASRQSFLNT
101: SKWIEEVRTE RGSDVIIVLV GNKTDLVDKR QVSIEEGEGK AKDLGVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSAK QEDMVDVNLK SSNANSSQSQ
201: AQAGGCSC

Best Arabidopsis Sequence Match ( AT2G44610.1 )
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: TKWIDEVRTE RGSDVIVVLV GNKTDLVDKR QVSIEEAEAK ARELNVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSTK QEDMVDVNLK SSNANASLAQ
201: QQSGGCSC

Arabidopsis Description

RABH1BRas-related protein RABH1b [Source:UniProtKB/Swiss-Prot;Acc:O80501]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.