Factsheet for VIT_02s0012g00710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g00640.t01	Wine grape	cytosol	95.53	95.53
GSMUA_Achr1P00610_001	Banana	cytosol	91.06	91.06
VIT_00s0665g00040.t01	Wine grape	extracellular	85.47	85.96
PGSC0003DMT400004322	Potato	cytosol	96.09	82.69
Solyc01g088560.2.1	Tomato	plastid	94.97	81.73
KRH77258	Soybean	endoplasmic reticulum	93.3	80.68
KRH28235	Soybean	cytosol	93.3	80.68
HORVU2Hr1G050270.2	Barley	cytosol	93.3	80.29
Os07t0496000-01	Rice	plasma membrane	93.3	80.29
TraesCS2A01G236600.1	Wheat	cytosol	93.3	80.29
TraesCS2B01G261200.1	Wheat	cytosol	93.3	80.29
TraesCS2D01G234600.1	Wheat	plastid	93.3	80.29
EER97251	Sorghum	cytosol	92.18	79.33
Zm00001d006433_P001	Maize	plasma membrane	92.18	79.33
GSMUA_AchrUn_...	Banana	cytosol	91.62	78.85
GSMUA_Achr5P12680_001	Banana	plasma membrane	90.5	77.88
Zm00001d021551_P002	Maize	cytosol	91.62	64.57
CDX81264	Canola	cytosol	73.18	64.22
AT5G64990.2	Thale cress	cytosol	75.98	63.85
Bra037802.1-P	Field mustard	cytosol	67.04	60.91
CDY18689	Canola	cytosol	73.18	60.37
VIT_02s0012g00790.t01	Wine grape	cytosol	37.43	57.76
VIT_13s0019g04680.t01	Wine grape	cytosol	37.43	33.5
VIT_11s0016g04020.t01	Wine grape	cytosol	31.28	32.37
VIT_09s0002g04600.t01	Wine grape	cytosol	35.2	31.66
VIT_04s0079g00760.t01	Wine grape	cytosol	33.52	26.2
Zm00001d024612_P011	Maize	mitochondrion	41.34	25.69

Protein Annotations

EntrezGene:100242004	wikigene:100242004	MapMan:22.8.1.8	Gene3D:3.40.50.300	EMBL:AM472148	ProteinID:CAN75036
ProteinID:CAN75036.1	ProteinID:CBI33936	ProteinID:CBI33936.3	UniProt:D7TTF7	EMBL:FN596247	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0006810
GO:GO:0006890	GO:GO:0006891	GO:GO:0008150	GO:GO:0016787	GO:GO:0042147	EntrezGene:LOC100242004
wikigene:LOC100242004	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF840	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC51777	TIGRFAMs:TIGR00231	UniParc:UPI0001BE453E	ArrayExpress:VIT_02s0012g00710
EnsemblPlantsGene:VIT_02s0012g00710	EnsemblPlants:VIT_02s0012g00710.t01	unigene:Vvi.24655	RefSeq:XP_002281823	RefSeq:XP_002281823.1	SEG:seg

Description

No Description!

Coordinates

chr2:+:6621244..6629164

Molecular Weight (calculated)

20010.8 Da

IEP (calculated)

5.387

GRAVY (calculated)

-0.273

Length

179 amino acids

Sequence
(BLAST)

001: MYDKFDNTYQ ATIGIDFLSK TMYLEDRTVR LQLWDTAGQE RFRSLIPSYI RDSSVAVIVY DVASRQSFLN TSKWIEEVRT ERGSDVIIVL VGNKTDLVEK
101: RQVSIEEGEA KARELNVMFI ETSAKAGFNI KALFRKIAAA LPGMETLSSA KQEDMVDVNL KSSSGSASQS QTQARGCSC

Best Arabidopsis Sequence Match ( AT2G44610.1 )
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: TKWIDEVRTE RGSDVIVVLV GNKTDLVDKR QVSIEEAEAK ARELNVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSTK QEDMVDVNLK SSNANASLAQ
201: QQSGGCSC

Arabidopsis Description

RABH1BRas-related protein RABH1b [Source:UniProtKB/Swiss-Prot;Acc:O80501]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.