Factsheet for VIT_15s0021g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g00710.t01	Wine grape	cytosol	95.53	95.53
GSMUA_Achr1P00610_001	Banana	cytosol	92.18	92.18
VIT_00s0665g00040.t01	Wine grape	extracellular	87.15	87.64
HORVU2Hr1G050270.2	Barley	cytosol	95.53	82.21
Os07t0496000-01	Rice	plasma membrane	95.53	82.21
TraesCS2A01G236600.1	Wheat	cytosol	95.53	82.21
TraesCS2B01G261200.1	Wheat	cytosol	95.53	82.21
TraesCS2D01G234600.1	Wheat	plastid	95.53	82.21
EER97251	Sorghum	cytosol	94.41	81.25
Zm00001d006433_P001	Maize	plasma membrane	94.41	81.25
GSMUA_AchrUn_...	Banana	cytosol	92.74	79.81
GSMUA_Achr5P12680_001	Banana	plasma membrane	91.62	78.85
Zm00001d021551_P002	Maize	cytosol	93.85	66.14
VIT_02s0012g00790.t01	Wine grape	cytosol	36.31	56.03
VIT_13s0019g04680.t01	Wine grape	cytosol	36.87	33.0
VIT_11s0016g04020.t01	Wine grape	cytosol	30.73	31.79
VIT_09s0002g04600.t01	Wine grape	cytosol	34.64	31.16
VIT_04s0079g00760.t01	Wine grape	cytosol	33.52	26.2
Zm00001d024612_P011	Maize	mitochondrion	40.78	25.35

Protein Annotations

EntrezGene:100263235	wikigene:100263235	MapMan:22.8.1.8	Gene3D:3.40.50.300	ProteinID:CBI16724	ProteinID:CBI16724.3
UniProt:D7SM46	EMBL:FN594952	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005829	GO:GO:0006810	GO:GO:0006890	GO:GO:0006891	GO:GO:0008150
GO:GO:0016787	GO:GO:0042147	EntrezGene:LOC100263235	wikigene:LOC100263235	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF840	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0001BE0FA2	ArrayExpress:VIT_15s0021g00640	EnsemblPlantsGene:VIT_15s0021g00640	EnsemblPlants:VIT_15s0021g00640.t01	unigene:Vvi.1976	RefSeq:XP_002266653
RefSeq:XP_002266653.1	:	:	:	:	:

Description

No Description!

Coordinates

chr15:+:10388195..10394447

Molecular Weight (calculated)

19961.7 Da

IEP (calculated)

5.051

GRAVY (calculated)

-0.273

Length

179 amino acids

Sequence
(BLAST)

001: MYDKFDNTYQ ATIGIDFLSK TMYLEDRTVR LQLWDTAGQE RFRSLIPSYI RDSSVAVIVY DVASRQSFLN TAKWIEEVRT ERGSDVIIVL VGNKTDLVDK
101: RQVSIEEGEA KARDLNVMFI ETSAKAGFNI KALFRKIAAA LPGMETLSSA KQEDMVDVNL KSSNTNASQS QPQAGGCSC

Best Arabidopsis Sequence Match ( AT2G44610.1 )
(BLAST)

001: MAPVSALAKY KLVFLGDQSV GKTSIITRFM YDKFDNTYQA TIGIDFLSKT MYLEDRTVRL QLWDTAGQER FRSLIPSYIR DSSVAVIVYD VASRQSFLNT
101: TKWIDEVRTE RGSDVIVVLV GNKTDLVDKR QVSIEEAEAK ARELNVMFIE TSAKAGFNIK ALFRKIAAAL PGMETLSSTK QEDMVDVNLK SSNANASLAQ
201: QQSGGCSC

Arabidopsis Description

RABH1BRas-related protein RABH1b [Source:UniProtKB/Swiss-Prot;Acc:O80501]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.