Factsheet for VIT_13s0019g04680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g00950.t01
VIT_04s0008g00960.t01
VIT_06s0080g00160.t01
VIT_18s0164g00070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	VIT_18s0164g00070.t01	AT1G71830.1	16621602
AT3G54840.1	VIT_06s0080g00160.t01	AT2G27600.1	17468262
AT3G54840.1	VIT_04s0008g00950.t01	AT4G33000.1	17825054
AT3G54840.1	VIT_04s0008g00960.t01	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91957	Soybean	cytosol	91.0	91.0
Solyc11g008430.1.1	Tomato	cytosol	90.5	90.5
PGSC0003DMT400019238	Potato	cytosol	90.5	90.5
AT3G54840.1	Thale cress	cytosol	89.0	88.12
Bra014785.1-P	Field mustard	cytosol, plastid	86.5	86.93
GSMUA_Achr1P03160_001	Banana	cytosol	76.5	86.93
TraesCS4D01G267900.1	Wheat	cytosol	72.0	86.23
KRH34819	Soybean	cytosol	87.5	85.37
CDY55834	Canola	cytosol, plastid	86.0	84.73
CDY61658	Canola	cytosol	85.5	84.65
CDX78272	Canola	cytosol	85.5	84.24
TraesCS1A01G140700.1	Wheat	cytosol	63.5	83.01
OQU93218	Sorghum	plastid	82.5	82.5
Os03t0151900-01	Rice	plasma membrane	82.0	82.41
GSMUA_Achr5P10670_001	Banana	cytosol	78.0	80.83
TraesCS4B01G268600.1	Wheat	plastid	80.0	80.4
TraesCS4A01G035800.1	Wheat	plastid	80.0	80.4
TraesCS1B01G157100.1	Wheat	cytosol, plastid	79.0	79.0
TraesCS1D01G139500.1	Wheat	cytosol, plastid	78.5	78.5
GSMUA_Achr4P29310_001	Banana	plastid	83.0	75.8
Zm00001d048410_P004	Maize	plastid	80.0	75.47
Os10t0441800-01	Rice	plasma membrane	83.5	66.8
HORVU4Hr1G072020.1	Barley	cytosol	79.5	61.15
Bra007104.1-P	Field mustard	endoplasmic reticulum	84.5	60.79
VIT_11s0016g04020.t01	Wine grape	cytosol	49.5	57.23
CDY02896	Canola	endoplasmic reticulum, golgi	76.0	56.51
VIT_09s0002g04600.t01	Wine grape	cytosol	52.0	52.26
VIT_04s0079g00760.t01	Wine grape	cytosol	53.0	46.29
VIT_02s0012g00710.t01	Wine grape	cytosol	33.5	37.43
VIT_15s0021g00640.t01	Wine grape	cytosol	33.0	36.87
VIT_00s0665g00040.t01	Wine grape	extracellular	31.5	35.39
VIT_02s0012g00790.t01	Wine grape	cytosol	11.0	18.97

Protein Annotations

EntrezGene:100259851	wikigene:100259851	MapMan:22.8.1.6	Gene3D:3.40.50.300	UniProt:A5BW15	EMBL:AM473219
ProteinID:CAN79376	ProteinID:CAN79376.1	ProteinID:CBI31427	ProteinID:CBI31427.3	EMBL:FN595998	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
EntrezGene:LOC100259851	wikigene:LOC100259851	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF618	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC55037	TIGRFAMs:TIGR00231	UniParc:UPI00015249F1	ArrayExpress:VIT_13s0019g04680
EnsemblPlantsGene:VIT_13s0019g04680	EnsemblPlants:VIT_13s0019g04680.t01	unigene:Vvi.2196	RefSeq:XP_002270699	RefSeq:XP_002270699.1	SEG:seg

Description

No Description!

Coordinates

chr13:+:6232379..6238869

Molecular Weight (calculated)

21701.7 Da

IEP (calculated)

6.533

GRAVY (calculated)

-0.243

Length

200 amino acids

Sequence
(BLAST)

001: MGCSSSLPDR NSGRLGGLNA ENGGAPDAKN LRVKLVLLGD SGVGKSCIVL RFVRGQFDPT SKVTVGASFL SQTIALQDST TVKFEIWDTA GQERYAALAP
101: LYYRGAAVAV VVYDITSPES FNKAQYWVKE LQKHGSPDIV MALVGNKADL HENREVPVQD GIDYAEKNGM FFIETSAKTA DNINQLFEEI AKRLPRPSSS

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.