Factsheet for HORVU4Hr1G072020.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G080020.6
HORVU3Hr1G010300.1
HORVU6Hr1G049080.7
HORVU7Hr1G068990.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	HORVU2Hr1G080020.6	AT1G71830.1	16621602
AT3G54840.1	HORVU6Hr1G049080.7	AT1G71830.1	16621602
AT3G54840.1	HORVU7Hr1G068990.2	AT1G71830.1	16621602
AT3G54840.1	HORVU3Hr1G010300.1	AT2G27600.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G267900.1	Wheat	cytosol	63.08	98.2
TraesCS4A01G035800.1	Wheat	plastid	75.0	97.99
TraesCS4B01G268600.1	Wheat	plastid	75.0	97.99
Os03t0151900-01	Rice	plasma membrane	69.23	90.45
OQU93218	Sorghum	plastid	68.46	89.0
GSMUA_Achr1P03160_001	Banana	cytosol	56.92	84.09
VIT_13s0019g04680.t01	Wine grape	cytosol	61.15	79.5
Zm00001d048410_P004	Maize	plastid	64.62	79.25
GSMUA_Achr5P10670_001	Banana	cytosol	56.92	76.68
Solyc11g008430.1.1	Tomato	cytosol	58.85	76.5
PGSC0003DMT400019238	Potato	cytosol	58.85	76.5
KRG91957	Soybean	cytosol	58.46	76.0
AT3G54840.1	Thale cress	cytosol	58.46	75.25
Bra014785.1-P	Field mustard	cytosol, plastid	57.31	74.87
CDY55834	Canola	cytosol, plastid	56.92	72.91
CDY61658	Canola	cytosol	56.54	72.77
CDX78272	Canola	cytosol	56.54	72.41
GSMUA_Achr4P29310_001	Banana	plastid	60.38	71.69
KRH34819	Soybean	cytosol	56.15	71.22
Bra007104.1-P	Field mustard	endoplasmic reticulum	56.54	52.88
HORVU5Hr1G002970.1	Barley	plastid	41.92	52.15
CDY02896	Canola	endoplasmic reticulum, golgi	49.23	47.58
HORVU1Hr1G013720.3	Barley	cytosol, mitochondrion, nucleus	35.77	45.81
HORVU2Hr1G027490.2	Barley	cytosol, mitochondrion, nucleus	32.31	44.68
HORVU4Hr1G002980.2	Barley	cytosol	40.77	44.35
HORVU7Hr1G101140.7	Barley	mitochondrion	35.0	41.94
HORVU2Hr1G050270.2	Barley	cytosol	27.31	34.13
HORVU4Hr1G078690.2	Barley	plastid	29.23	24.76

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	UniProt:A0A287PLA9	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005769	GO:GO:0006810	GO:GO:0008150	GO:GO:0010009
GO:GO:0016020	GO:GO:0016787	GO:GO:0045022	EnsemblPlantsGene:HORVU4Hr1G072020	EnsemblPlants:HORVU4Hr1G072020.1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF618	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI000B4774C3	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:583211766..583215394

Molecular Weight (calculated)

28377.7 Da

IEP (calculated)

10.264

GRAVY (calculated)

-0.507

Length

260 amino acids

Sequence
(BLAST)

001: TTDRALDRTN KRTVPCLRLR ASERANRGGQ RNRRIDPPPP PPRRSPPLPV DFARTRPKAP AMGCSSSAPA RSTGGLNNIN GSSSATDSND LRAKLVLLGD
101: SGVGKSCIVL RFVRGQFDPT SKVTVGASFL SQTLALEDST IVKFEIWDTA GQERYAALAP LYYRGAAAAV VVYDITSPES FKKAQYWVKE LQKHGNPGIV
201: MVLVGNKADL HESRSVPSQE AQEYAEKNSM LFMETSAKTS DNINQVFEEI AKRLPKPTTS

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.