Factsheet for Bra007104.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000503.1-P
Bra003911.1-P
Bra011404.1-P
Bra012009.1-P
Bra016112.1-P
Bra034543.1-P
Bra037030.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54840.1	Bra003911.1-P	AT1G71830.1	16621602
AT3G54840.1	Bra016112.1-P	AT1G71830.1	16621602
AT3G54840.1	Bra000503.1-P	AT2G27600.1	17468262
AT3G54840.1	Bra012009.1-P	AT2G27600.1	17468262
AT3G54840.1	Bra011404.1-P	AT4G33000.1	17825054
AT3G54840.1	Bra034543.1-P	AT4G33000.1	17825054
AT3G54840.1	Bra037030.1-P	AT4G33000.1	17825054

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78272	Canola	cytosol	70.5	96.55
CDY55834	Canola	cytosol, plastid	70.14	96.06
AT3G54840.1	Thale cress	cytosol	66.55	91.58
Bra014785.1-P	Field mustard	cytosol, plastid	65.11	90.95
VIT_13s0019g04680.t01	Wine grape	cytosol	60.79	84.5
GSMUA_Achr1P03160_001	Banana	cytosol	52.88	83.52
KRG91957	Soybean	cytosol	59.71	83.0
TraesCS1A01G140700.1	Wheat	cytosol	44.96	81.7
TraesCS4D01G267900.1	Wheat	cytosol	48.92	81.44
Solyc11g008430.1.1	Tomato	cytosol	57.91	80.5
PGSC0003DMT400019238	Potato	cytosol	57.91	80.5
KRH34819	Soybean	cytosol	57.55	78.05
Os03t0151900-01	Rice	plasma membrane	53.96	75.38
OQU93218	Sorghum	plastid	53.6	74.5
TraesCS4A01G035800.1	Wheat	plastid	52.88	73.87
TraesCS4B01G268600.1	Wheat	plastid	52.88	73.87
TraesCS1B01G157100.1	Wheat	cytosol, plastid	52.16	72.5
GSMUA_Achr5P10670_001	Banana	cytosol	50.0	72.02
TraesCS1D01G139500.1	Wheat	cytosol, plastid	51.8	72.0
GSMUA_Achr4P29310_001	Banana	plastid	55.4	70.32
Zm00001d048410_P004	Maize	plastid	52.52	68.87
Os10t0441800-01	Rice	plasma membrane	56.12	62.4
HORVU4Hr1G072020.1	Barley	cytosol	52.88	56.54
Bra027593.1-P	Field mustard	cytosol	35.61	49.75
Bra025091.1-P	Field mustard	cytosol	35.61	49.5
Bra013410.1-P	Field mustard	cytosol	34.53	48.0
Bra037641.1-P	Field mustard	cytosol	28.78	38.46
Bra000355.1-P	Field mustard	cytosol	28.78	38.46
Bra004850.1-P	Field mustard	cytosol	28.42	37.98
Bra006054.1-P	Field mustard	cytosol	28.06	37.68
Bra009046.1-P	Field mustard	cytosol	27.7	37.38
Bra038535.1-P	Field mustard	cytosol	27.34	36.72
Bra037802.1-P	Field mustard	cytosol	23.38	32.99
Bra017875.1-P	Field mustard	mitochondrion	26.98	29.07

Protein Annotations

MapMan:22.8.1.6	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra007104	EnsemblPlants:Bra007104.1	EnsemblPlants:Bra007104.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4CSB2	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF618	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	SignalP:SignalP-noTM
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002542999	:	:

Description

AT3G54840 (E=1e-100) ARA6, ATRABF1, ARA-6, ATRAB5C | ARA6; GTP binding / GTPase

Coordinates

chrA09:+:27342032..27345574

Molecular Weight (calculated)

30492.1 Da

IEP (calculated)

8.196

GRAVY (calculated)

-0.230

Length

278 amino acids

Sequence
(BLAST)

001: MPSYISFIVL LYIFLLSFSP QTTFVNASRP LWVSNKSGHT SLNTFYTSGS EQGKLHDGAM NDCLPKGFRF NSAPSRYINS HALDRNSGAL NGLTSSENAA
101: PADAKNLRVK LVLLGDSGVG KSCIVLQFVR GQFDATSKVT VGASFLSQTI TLQDSTTVKF EIWDTAGQER YSALAPLYYR GAGVAVIVYD ITSPESFKKA
201: QYWVKELQKH GSPDIVMALV GNKADLHEKR EVPSEDGMEL AEKNGMFFIE TSAKTADNIN ELFQEIGKRL PRPSQPSS

Best Arabidopsis Sequence Match ( AT3G54840.1 )
(BLAST)

001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS

Arabidopsis Description

RABF1Ras-related protein RABF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CB01]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.