Factsheet for Bra012009.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007104.1-P
Bra013410.1-P
Bra014785.1-P
Bra026406.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	Bra007104.1-P	AT3G54840.1	17468262
AT2G27600.1	Bra014785.1-P	AT3G54840.1	17468262
AT2G27600.1	Bra013410.1-P	AT4G19640.1	17468262
AT2G27600.1	Bra026406.1-P	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04504	Canola	cytosol	99.31	99.54
CDX71438	Canola	cytosol	97.92	98.83
Bra000503.1-P	Field mustard	cytosol	97.23	97.23
AT2G27600.1	Thale cress	cytosol	95.84	95.4
Bra018640.1-P	Field mustard	cytosol	93.07	93.72
KRH26619	Soybean	nucleus	90.3	89.68
KRH22691	Soybean	cytosol	84.53	89.49
VIT_06s0080g00160.t01	Wine grape	extracellular	88.91	88.91
Os01t0141100-02	Rice	cytosol, plasma membrane	62.12	88.78
KRH30451	Soybean	cytosol	88.91	88.71
KRH25197	Soybean	cytosol	88.91	88.71
GSMUA_Achr4P24320_001	Banana	cytosol	82.91	87.99
Zm00001d039904_P006	Maize	cytosol	88.22	87.82
EES00346	Sorghum	cytosol	88.22	87.61
GSMUA_Achr2P22550_001	Banana	cytosol	82.91	87.14
TraesCS3A01G054100.1	Wheat	cytosol	87.76	86.76
TraesCS3B01G065200.1	Wheat	cytosol	87.53	86.53
TraesCS3D01G053600.1	Wheat	cytosol	87.3	86.3
GSMUA_Achr3P01430_001	Banana	cytosol	81.76	86.13
PGSC0003DMT400050194	Potato	cytosol	85.91	85.52
Solyc11g007170.1.1	Tomato	cytosol	79.68	85.4
Zm00001d008596_P005	Maize	cytosol	87.99	83.74
TraesCS6A01G133300.1	Wheat	cytosol	73.9	73.06
TraesCS6D01G122900.1	Wheat	cytosol	73.67	73.0
TraesCS6B01G161700.1	Wheat	cytosol	73.44	72.77
Os02t0159900-01	Rice	plasma membrane	71.82	71.82
Os01t0141300-00	Rice	cytosol	72.75	65.9
HORVU3Hr1G010300.1	Barley	cytosol, plastid	74.6	61.64
Bra004917.1-P	Field mustard	cytosol	28.41	38.56
Bra005414.1-P	Field mustard	cytosol	32.56	35.97
Bra039332.1-P	Field mustard	cytosol	29.79	29.52
Bra008479.1-P	Field mustard	cytosol	35.33	28.98
Bra003561.1-P	Field mustard	cytosol	35.33	28.81
Bra029063.1-P	Field mustard	endoplasmic reticulum	24.94	27.62
Bra003048.1-P	Field mustard	endoplasmic reticulum	25.17	27.46
Bra019030.1-P	Field mustard	endoplasmic reticulum, plasma membrane	24.71	27.3
Bra026316.1-P	Field mustard	endoplasmic reticulum	24.48	27.04
Bra022979.1-P	Field mustard	plastid	31.87	23.92
Bra032982.1-P	Field mustard	plastid	32.56	21.76
Bra027756.1-P	Field mustard	endoplasmic reticulum	29.33	15.28
Bra003102.1-P	Field mustard	extracellular, plasma membrane	28.87	15.21
Bra029104.1-P	Field mustard	extracellular, plasma membrane	28.87	15.19
Bra024235.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	28.41	14.98
Bra026293.1-P	Field mustard	endoplasmic reticulum, extracellular	27.71	14.48
Bra038230.1-P	Field mustard	cytosol, mitochondrion, plastid	29.79	13.0
Bra014239.1-P	Field mustard	mitochondrion	29.56	12.81
Bra032579.1-P	Field mustard	plastid	26.79	10.11
Bra018548.1-P	Field mustard	plastid	28.18	10.01
Bra000878.1-P	Field mustard	plastid	27.94	9.66
Bra036265.1-P	Field mustard	plastid	27.71	9.3
Bra033356.1-P	Field mustard	cytosol, plastid	27.94	8.12

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra012009	EnsemblPlants:Bra012009.1	EnsemblPlants:Bra012009.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	UniProt:M4D6A0	InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF04212	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137
SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540	UniParc:UPI000254192D	InterPro:Vps4_C
SEG:seg	:	:	:	:	:

Description

AT2G27600 (E=2e-222) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding

Coordinates

chrA07:+:10627066..10629454

Molecular Weight (calculated)

48248.2 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.550

Length

433 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVKQAVQED NAGNYSKAFP LYMNALEYFK THLKYEKNPK IREAITHKFT DYLRRAEEIR AVLDEGGPGP GSNGGDAAVA TKPKSKPKDG
101: GGDGEDPEQS KLRAGLDSAI VREKPNIKWT DVAGLESAKQ ALQEAVILPV KFPQFFTGKR RPWRAFLLYG PPGTGKSYLA KAVATEADST FFSVSSSDLV
201: SKWMGESEKL VSNLFEMARE SSPSIIFVDE IDSLCGQRGE GNESEASRRI KTELLVQMQG VGHSDDKVLV LAATNTPYAL DQAIRRRFDK RIYIPLPEAK
301: ARQHMFKVHL GDTPHNLTES DFEYLGLKTE GFSGSDVSVC VKDVLFEPVR KTQDAMFFFK SPDGTWMPCG PRQPGAIQTT MQDLATKGLA EKIIPPPITR
401: TDFEKVLARQ RPTVSKSDLD VHERFTQEFG EEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.