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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 5
  • golgi 4
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY71574 Canola endoplasmic reticulum, plasma membrane 99.74 99.74
CDY29857 Canola endoplasmic reticulum, plasma membrane 98.72 98.98
CDX92836 Canola endoplasmic reticulum, plasma membrane 98.47 98.72
Bra026316.1-P Field mustard endoplasmic reticulum 94.64 94.64
AT4G27680.1 Thale cress endoplasmic reticulum, plasma membrane 93.62 92.21
KRH53570 Soybean endoplasmic reticulum, plasma membrane 81.89 81.89
KRH64362 Soybean endoplasmic reticulum, plasma membrane 81.38 81.38
PGSC0003DMT400013963 Potato endoplasmic reticulum 80.36 80.36
Solyc06g053160.2.1 Tomato endoplasmic reticulum, plasma membrane 80.36 80.36
Bra003048.1-P Field mustard endoplasmic reticulum 79.85 78.84
KRH15897 Soybean endoplasmic reticulum 77.81 78.21
PGSC0003DMT400047633 Potato endoplasmic reticulum 75.0 77.78
Solyc03g082630.2.1 Tomato endoplasmic reticulum 74.74 77.72
Bra029063.1-P Field mustard endoplasmic reticulum 75.26 75.45
GSMUA_Achr11P... Banana endoplasmic reticulum 74.23 75.0
GSMUA_Achr4P05220_001 Banana endoplasmic reticulum 72.96 73.71
KXG20883 Sorghum endoplasmic reticulum 72.19 72.38
TraesCS7D01G381400.1 Wheat endoplasmic reticulum 68.62 72.31
TraesCS7B01G287800.1 Wheat golgi 68.62 72.12
TraesCS7A01G384900.1 Wheat endoplasmic reticulum 68.37 71.85
Os06t0714500-01 Rice plasma membrane 71.94 71.76
Zm00001d014775_P002 Maize plastid 71.17 71.36
HORVU0Hr1G021880.1 Barley endoplasmic reticulum 71.68 71.32
HORVU7Hr1G091480.2 Barley plastid 70.66 64.12
Zm00001d036410_P002 Maize plastid 71.43 58.82
VIT_16s0098g01260.t01 Wine grape endoplasmic reticulum 79.34 40.28
Bra005414.1-P Field mustard cytosol 28.83 28.83
Bra004917.1-P Field mustard cytosol 22.96 28.21
Bra018640.1-P Field mustard cytosol 28.06 25.58
Bra012009.1-P Field mustard cytosol 27.3 24.71
Bra000503.1-P Field mustard cytosol 27.04 24.48
Bra039332.1-P Field mustard cytosol 23.47 21.05
Bra003561.1-P Field mustard cytosol 27.55 20.34
Bra022979.1-P Field mustard plastid 29.59 20.1
Bra008479.1-P Field mustard cytosol 27.04 20.08
Bra003102.1-P Field mustard extracellular, plasma membrane 42.09 20.07
Bra027756.1-P Field mustard endoplasmic reticulum 41.84 19.74
Bra029104.1-P Field mustard extracellular, plasma membrane 41.33 19.68
Bra024235.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 40.05 19.12
Bra026293.1-P Field mustard endoplasmic reticulum, extracellular 39.29 18.58
Bra032982.1-P Field mustard plastid 29.34 17.75
Bra014239.1-P Field mustard mitochondrion 39.8 15.62
Bra038230.1-P Field mustard cytosol, mitochondrion, plastid 38.78 15.32
Bra032579.1-P Field mustard plastid 41.33 14.12
Bra018548.1-P Field mustard plastid 43.11 13.86
Bra000878.1-P Field mustard plastid 42.86 13.42
Bra036265.1-P Field mustard plastid 43.11 13.1
Bra033356.1-P Field mustard cytosol, plastid 43.62 11.47
Protein Annotations
Gene3D:1.10.8.60Gene3D:3.40.50.300MapMan:35.1InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_core
EnsemblPlantsGene:Bra019030EnsemblPlants:Bra019030.1EnsemblPlants:Bra019030.1-PGO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0016020GO:GO:0016021UniProt:M4DR87InterPro:P-loop_NTPase
PFAM:PF00004ScanProsite:PS00674PANTHER:PTHR23074PANTHER:PTHR23074:SF20SMART:SM00382SUPFAM:SSF52540
TMHMM:TMhelixUniParc:UPI0002540B3D::::
Description
AT4G27680 (E=1e-207) | MSP1 protein, putative / intramitochondrial sorting protein, putative
Coordinates
chrA03:+:26651295..26652771
Molecular Weight (calculated)
43472.5 Da
IEP (calculated)
5.784
GRAVY (calculated)
-0.209
Length
392 amino acids
Sequence
(BLAST)
001: MGGSSETKIL QELILYAASA ALSCLVLFAG LKHLDPNREA SKKALEHKKE ISKRLGRPLI HTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQSLYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVAAV FSLAYKLQPA IIFIDEVDSF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP NARVMVLAAT NRPSELDEAI LRRLPQAFEI GMPDRKERAE ILKVTLKGER VEPDIDFDHV ARLCEGYTGS DIFELCKKAA
301: YFPIREILEE ERKGRPCPVP RPLSQLDLEK VLATSKKTQV AAGEYSGLRV SREPDEVQAA ISGISKLLVS QFINIQSDSQ GSWQRDEPEE DS
Best Arabidopsis Sequence Match ( AT4G27680.1 )
(BLAST)
001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
Arabidopsis Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.