Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- endoplasmic reticulum 3
- plastid 2
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G287800.1 | Wheat | golgi | 91.37 | 96.51 |
| TraesCS7D01G381400.1 | Wheat | endoplasmic reticulum | 91.12 | 96.51 |
| TraesCS7A01G384900.1 | Wheat | endoplasmic reticulum | 90.86 | 95.98 |
| Os06t0714500-01 | Rice | plasma membrane | 89.85 | 90.08 |
| KXG20883 | Sorghum | endoplasmic reticulum | 87.82 | 88.49 |
| HORVU7Hr1G091480.2 | Barley | plastid | 96.7 | 88.19 |
| Zm00001d014775_P002 | Maize | plastid | 86.8 | 87.47 |
| GSMUA_Achr4P05220_001 | Banana | endoplasmic reticulum | 80.46 | 81.7 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 80.2 | 81.44 |
| Solyc03g082630.2.1 | Tomato | endoplasmic reticulum | 70.56 | 73.74 |
| PGSC0003DMT400047633 | Potato | endoplasmic reticulum | 70.56 | 73.55 |
| KRH64362 | Soybean | endoplasmic reticulum, plasma membrane | 73.1 | 73.47 |
| Solyc06g053160.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 72.59 | 72.96 |
| KRH53570 | Soybean | endoplasmic reticulum, plasma membrane | 72.33 | 72.7 |
| PGSC0003DMT400013963 | Potato | endoplasmic reticulum | 72.08 | 72.45 |
| AT4G27680.1 | Thale cress | endoplasmic reticulum, plasma membrane | 72.59 | 71.86 |
| KRH15897 | Soybean | endoplasmic reticulum | 71.07 | 71.79 |
| CDY55344 | Canola | endoplasmic reticulum | 71.32 | 71.68 |
| CDY30236 | Canola | endoplasmic reticulum | 71.32 | 71.68 |
| Bra026316.1-P | Field mustard | endoplasmic reticulum | 71.32 | 71.68 |
| Bra019030.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 71.32 | 71.68 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 71.07 | 71.43 |
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 70.81 | 71.36 |
| CDX92836 | Canola | endoplasmic reticulum, plasma membrane | 70.81 | 71.36 |
| CDY19035 | Canola | endoplasmic reticulum | 70.56 | 70.92 |
| Zm00001d036410_P002 | Maize | plastid | 85.28 | 70.59 |
| PGSC0003DMT400031598 | Potato | endoplasmic reticulum | 63.96 | 70.19 |
| CDY14372 | Canola | endoplasmic reticulum | 70.56 | 70.03 |
| AT5G53540.1 | Thale cress | endoplasmic reticulum | 71.57 | 69.98 |
| Bra003048.1-P | Field mustard | endoplasmic reticulum | 70.3 | 69.77 |
| CDY20251 | Canola | endoplasmic reticulum | 70.81 | 69.4 |
| CDY38752 | Canola | endoplasmic reticulum | 66.75 | 68.13 |
| Solyc08g083020.2.1 | Tomato | plastid | 61.93 | 67.97 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 64.97 | 65.81 |
| Bra029063.1-P | Field mustard | endoplasmic reticulum | 64.72 | 65.22 |
| VIT_16s0098g01260.t01 | Wine grape | endoplasmic reticulum | 71.83 | 36.66 |
| HORVU6Hr1G038660.1 | Barley | cytosol, mitochondrion | 14.21 | 31.46 |
| HORVU3Hr1G072910.6 | Barley | cytosol | 29.19 | 30.59 |
| HORVU4Hr1G059020.1 | Barley | cytosol, endoplasmic reticulum | 18.53 | 30.29 |
| HORVU7Hr1G026880.14 | Barley | cytosol | 35.03 | 29.68 |
| HORVU4Hr1G059040.2 | Barley | cytosol | 18.78 | 29.37 |
| HORVU3Hr1G072480.2 | Barley | cytosol | 18.78 | 29.37 |
| HORVU5Hr1G104980.1 | Barley | endoplasmic reticulum, mitochondrion | 19.8 | 27.27 |
| HORVU3Hr1G061800.1 | Barley | cytosol, plastid | 27.41 | 23.23 |
| HORVU3Hr1G063300.1 | Barley | cytosol | 27.66 | 20.92 |
| HORVU7Hr1G013190.8 | Barley | plastid | 28.68 | 20.21 |
| HORVU3Hr1G010300.1 | Barley | cytosol, plastid | 25.63 | 19.27 |
| HORVU3Hr1G055830.5 | Barley | cytosol | 36.55 | 17.82 |
| HORVU1Hr1G092440.13 | Barley | cytosol, golgi, mitochondrion, plastid | 39.09 | 17.76 |
| HORVU3Hr1G030770.20 | Barley | cytosol, vacuole | 37.06 | 17.36 |
| HORVU5Hr1G029910.10 | Barley | cytosol, mitochondrion, nucleus | 28.93 | 15.99 |
| HORVU2Hr1G019730.5 | Barley | cytosol, plastid | 41.12 | 15.43 |
| HORVU6Hr1G075440.6 | Barley | mitochondrion | 37.06 | 14.81 |
| HORVU4Hr1G046420.6 | Barley | cytosol, plastid | 40.61 | 13.85 |
| HORVU7Hr1G037870.1 | Barley | plastid | 36.04 | 13.67 |
| HORVU4Hr1G033300.1 | Barley | cytosol | 40.36 | 12.28 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:AAA+_ATPase | EMBL:AK363936 | EMBL:AK364493 |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | UniProt:F2DJ68 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:HORVU0Hr1G021880 | EnsemblPlants:HORVU0Hr1G021880.1 |
| InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PFscan:PS51257 | PANTHER:PTHR23074 | PANTHER:PTHR23074:SF20 |
| SMART:SM00382 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI000200664A | SEG:seg | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DJ68]
Coordinates
chrchrUn:+:113488565..113493440
Molecular Weight (calculated)
43609.1 Da
IEP (calculated)
5.399
GRAVY (calculated)
-0.261
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSTDSSSRF VQELVLYAAS AALSCLVLFA GLRQLDPNRE SSKKALQQKK EIAKRLGRPL ISTTPYEDVI ACDVINPDEI DVEFESVGGL DEVKQALYEL
101: VILPLRRPEL FAYGKLLSPQ KGVLLYGPPG TGKTMLAKAI AKESGAVFIN VRISNLMSKW FGDAQKLVSA VFSLANKLQP AIIFIDEVDS FLGQRRNTDH
201: EALTNMKTEF MSLWDGFTTD QNARVMVLAA TNRPSELDEA ILRRFTQIFE IGVPSRSERS KILQVILKGE NVESNIDYDY IASLCEGFTG SDILELCKQA
301: AFYPIREILN SEKDGTRANS PRALRQSDLE KALSTSRKGK KAASGAASGF QSPVWTRPSD PEDDQVQSAI FEISKLMSRI VQNSQSEPQE PSSP
101: VILPLRRPEL FAYGKLLSPQ KGVLLYGPPG TGKTMLAKAI AKESGAVFIN VRISNLMSKW FGDAQKLVSA VFSLANKLQP AIIFIDEVDS FLGQRRNTDH
201: EALTNMKTEF MSLWDGFTTD QNARVMVLAA TNRPSELDEA ILRRFTQIFE IGVPSRSERS KILQVILKGE NVESNIDYDY IASLCEGFTG SDILELCKQA
301: AFYPIREILN SEKDGTRANS PRALRQSDLE KALSTSRKGK KAASGAASGF QSPVWTRPSD PEDDQVQSAI FEISKLMSRI VQNSQSEPQE PSSP
001: MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
101: ILPLKRPELF AYGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA IIFIDEVESF LGQRRSTDHE
201: AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA
301: YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR
Arabidopsis Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.