Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003048.1-P | Field mustard | endoplasmic reticulum | 83.37 | 84.63 |
| CDY14372 | Canola | endoplasmic reticulum | 83.13 | 84.38 |
| CDY20251 | Canola | endoplasmic reticulum | 83.87 | 84.08 |
| AT4G27680.1 | Thale cress | endoplasmic reticulum, plasma membrane | 79.9 | 80.9 |
| CDY38752 | Canola | endoplasmic reticulum | 76.43 | 79.79 |
| Solyc03g082630.2.1 | Tomato | endoplasmic reticulum | 73.7 | 78.78 |
| PGSC0003DMT400047633 | Potato | endoplasmic reticulum | 73.45 | 78.31 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 74.44 | 77.12 |
| KRH53570 | Soybean | endoplasmic reticulum, plasma membrane | 74.94 | 77.04 |
| Solyc06g053160.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 74.44 | 76.53 |
| Bra029063.1-P | Field mustard | endoplasmic reticulum | 74.19 | 76.47 |
| PGSC0003DMT400013963 | Potato | endoplasmic reticulum | 74.19 | 76.28 |
| KRH64362 | Soybean | endoplasmic reticulum, plasma membrane | 73.95 | 76.02 |
| KRH15897 | Soybean | endoplasmic reticulum | 72.7 | 75.13 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 70.97 | 73.71 |
| GSMUA_Achr4P05220_001 | Banana | endoplasmic reticulum | 70.22 | 72.94 |
| TraesCS7B01G287800.1 | Wheat | golgi | 67.49 | 72.92 |
| TraesCS7D01G381400.1 | Wheat | endoplasmic reticulum | 67.25 | 72.85 |
| TraesCS7A01G384900.1 | Wheat | endoplasmic reticulum | 67.0 | 72.39 |
| Os06t0714500-01 | Rice | plasma membrane | 69.98 | 71.76 |
| HORVU0Hr1G021880.1 | Barley | endoplasmic reticulum | 69.98 | 71.57 |
| KXG20883 | Sorghum | endoplasmic reticulum | 68.49 | 70.59 |
| Zm00001d014775_P002 | Maize | plastid | 67.74 | 69.82 |
| HORVU7Hr1G091480.2 | Barley | plastid | 68.73 | 64.12 |
| Zm00001d036410_P002 | Maize | plastid | 67.74 | 57.35 |
| VIT_16s0098g01260.t01 | Wine grape | endoplasmic reticulum | 73.7 | 38.47 |
| AT2G34560.2 | Thale cress | cytosol | 26.05 | 26.72 |
| AT2G27600.1 | Thale cress | cytosol | 26.55 | 24.6 |
| AT2G45500.5 | Thale cress | cytosol | 28.29 | 22.94 |
| AT1G80350.1 | Thale cress | cytosol | 26.3 | 20.27 |
| AT1G64110.2 | Thale cress | cytosol | 38.96 | 18.94 |
| AT5G52882.1 | Thale cress | extracellular, vacuole | 38.21 | 18.58 |
| AT4G28000.2 | Thale cress | extracellular | 36.97 | 17.91 |
| AT3G27120.1 | Thale cress | nucleus | 28.29 | 16.76 |
| AT1G50140.1 | Thale cress | mitochondrion | 36.48 | 14.66 |
| AT3G19740.1 | Thale cress | cytosol, mitochondrion, plastid | 34.99 | 14.2 |
| AT4G24860.1 | Thale cress | cytosol, plastid | 38.96 | 13.99 |
| AT1G62130.1 | Thale cress | cytosol, plastid | 33.99 | 13.14 |
| AT1G02890.1 | Thale cress | plastid | 40.45 | 13.08 |
| AT4G02480.1 | Thale cress | plastid | 40.2 | 12.81 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:835436 | InterPro:AAA+_ATPase | ProteinID:AED96374.1 |
| ArrayExpress:AT5G53540 | EnsemblPlantsGene:AT5G53540 | RefSeq:AT5G53540 | TAIR:AT5G53540 | RefSeq:AT5G53540-TAIR-G | EnsemblPlants:AT5G53540.1 |
| TAIR:AT5G53540.1 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EMBL:AY058857 | Unigene:At.26650 | ProteinID:BAB09730.1 |
| EMBL:BT002644 | GO:GO:0000166 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | GO:GO:0016887 | GO:GO:0072593 | RefSeq:NP_200166.1 | InterPro:P-loop_NTPase | PFAM:PF00004 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00830 | ScanProsite:PS00674 | PANTHER:PTHR23074 |
| PANTHER:PTHR23074:SF20 | UniProt:Q9FJC9 | SMART:SM00382 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI00000AC4C9 |
Description
26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FJC9]
Coordinates
chr5:-:21749279..21751338
Molecular Weight (calculated)
44850.8 Da
IEP (calculated)
5.610
GRAVY (calculated)
-0.254
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRSSGRKDS NFIEQLILYV ASAALSSLVL YVGLRQLDPN RDAAKKSLEH KREIAKRLGR PLIQTNQYED VIACDVINPL HIDVEFGSIG GLESIKQALY
101: ELVILPLKRP ELFAYGKLLG PQKGVLLYGP PGTGKTMLAK AIARESEAVF INVKVSNLMS KWFGDAQKLV SAVFSLAYKL QPAIIFIDEV DSFLGQRRST
201: DNEAMSNMKT EFMALWDGFT TDQNARVMVL AATNRPSELD EAILRRFPQS FEIGMPDCQE RAQILKVVLK GESVESDINY DRIARLCEDY TGSDIFELCK
301: KAAYFPIREI LEAEKEGKRV SVPRPLTQLD LEKVLATSKK TQVAASEYTG LSSQSSVWGS PSNADEVQAA INGISKLFVS QLRNIQPDSQ DSYQQHPSEG
401: DSE
101: ELVILPLKRP ELFAYGKLLG PQKGVLLYGP PGTGKTMLAK AIARESEAVF INVKVSNLMS KWFGDAQKLV SAVFSLAYKL QPAIIFIDEV DSFLGQRRST
201: DNEAMSNMKT EFMALWDGFT TDQNARVMVL AATNRPSELD EAILRRFPQS FEIGMPDCQE RAQILKVVLK GESVESDINY DRIARLCEDY TGSDIFELCK
301: KAAYFPIREI LEAEKEGKRV SVPRPLTQLD LEKVLATSKK TQVAASEYTG LSSQSSVWGS PSNADEVQAA INGISKLFVS QLRNIQPDSQ DSYQQHPSEG
401: DSE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.