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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • plastid 3
  • mitochondrion 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra038230.1-P Field mustard cytosol, mitochondrion, plastid 85.9 85.99
CDY33415 Canola cytosol, mitochondrion 86.0 84.06
Os02t0749150-01 Rice mitochondrion 22.66 83.96
CDY42204 Canola cytosol, mitochondrion, plastid 86.0 82.04
Os06t0225900-01 Rice cytosol 30.21 81.74
HORVU6Hr1G038660.1 Barley cytosol, mitochondrion 13.9 77.53
AT1G50140.1 Thale cress mitochondrion 76.94 76.17
HORVU4Hr1G059020.1 Barley cytosol, endoplasmic reticulum 17.72 73.03
HORVU4Hr1G059040.2 Barley cytosol 18.33 72.22
CDY24618 Canola endoplasmic reticulum 20.14 71.17
HORVU3Hr1G072480.2 Barley cytosol 17.82 70.24
HORVU5Hr1G104980.1 Barley endoplasmic reticulum, mitochondrion 19.13 66.43
VIT_01s0011g02220.t01 Wine grape cytosol, mitochondrion, plastid 66.47 66.0
Solyc02g014350.2.1 Tomato mitochondrion 64.95 64.69
KRH24190 Soybean mitochondrion 66.06 63.14
KRH29161 Soybean cytosol, mitochondrion 65.66 62.81
EES05524 Sorghum plastid 58.61 58.97
Zm00001d052248_P009 Maize mitochondrion 58.11 58.46
TraesCS6D01G284600.1 Wheat mitochondrion 57.7 58.29
TraesCS7A01G184700.1 Wheat mitochondrion 57.0 58.29
TraesCS6B01G333700.1 Wheat mitochondrion 57.3 58.12
TraesCS7D01G186200.1 Wheat mitochondrion 56.7 57.92
TraesCS7B01G089500.1 Wheat mitochondrion 56.7 57.86
OQU76102 Sorghum mitochondrion 56.29 57.75
TraesCS6A01G305500.1 Wheat mitochondrion 57.1 57.68
HORVU6Hr1G075440.6 Barley mitochondrion 57.0 57.4
GSMUA_Achr7P07310_001 Banana mitochondrion 60.62 57.39
HORVU7Hr1G037870.1 Barley plastid 57.1 54.57
AT4G27680.1 Thale cress endoplasmic reticulum, plasma membrane 15.31 38.19
AT5G53540.1 Thale cress endoplasmic reticulum 14.2 34.99
AT1G64110.2 Thale cress cytosol 26.49 31.73
AT4G28000.2 Thale cress extracellular 26.38 31.49
AT5G52882.1 Thale cress extracellular, vacuole 26.18 31.36
AT2G34560.2 Thale cress cytosol 12.19 30.79
AT2G45500.5 Thale cress cytosol 15.31 30.58
AT2G27600.1 Thale cress cytosol 12.89 29.43
AT1G80350.1 Thale cress cytosol 13.7 26.0
AT1G02890.1 Thale cress plastid 32.33 25.76
AT4G02480.1 Thale cress plastid 32.73 25.69
AT1G62130.1 Thale cress cytosol, plastid 26.79 25.5
AT4G24860.1 Thale cress cytosol, plastid 28.3 25.04
AT3G27120.1 Thale cress nucleus 15.51 22.65
Protein Annotations
Gene3D:1.10.8.60Gene3D:3.40.50.300MapMan:35.1EntrezGene:821511InterPro:AAA+_ATPaseProteinID:AEE76282.1
ArrayExpress:AT3G19740EnsemblPlantsGene:AT3G19740RefSeq:AT3G19740TAIR:AT3G19740RefSeq:AT3G19740-TAIR-GEnsemblPlants:AT3G19740.1
TAIR:AT3G19740.1InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreUnigene:At.8148ncoils:CoilUniProt:F4JCC9
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0016787GO:GO:0016887RefSeq:NP_188608.4
InterPro:P-loop_NTPasePFAM:PF00004PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281ScanProsite:PS00674
PANTHER:PTHR23074PANTHER:PTHR23074:SF95SMART:SM00382SUPFAM:SSF52540UniParc:UPI0001E92DA3SEG:seg
Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JCC9]
Coordinates
chr3:-:6855688..6863547
Molecular Weight (calculated)
111368.0 Da
IEP (calculated)
6.005
GRAVY (calculated)
-0.565
Length
993 amino acids
Sequence
(BLAST)
001: MYTRALKRNQ RWGLVLQQAK YLVRPVVRDY TVSRYCGFTN KLTNSENLTR KSLLGSFSPR GGTIASGNHL SILKNSQLRS FSSEGDGRNA SEDKHISLNK
101: ENGVDDGKTG KEKSNNGVGH LDSHAQLGEQ DQIEWLNNEK LASECKKKES PFVNRRERFK NEFLRRIQPW EKIQLSWETF PYYIHDHTKD ILVECVTSHI
201: RQKNAASIYG ARLDSSSGRI LLQSVPGTEL YRERLVRALA RDVQVPLLVL DSSVLAPYDF ADDYNEESES DGENAEAEAD ESTTESDAEE DSSAQSEEDS
301: EAKADGSDSE EACLEVSEEA IKKIVPKLEE FEKLVAEELH GEACEAAAVE HSDKARRPAK KGDRVKYVGP SKKADAKHRP LSSGQRGEVY EVNGNRVAVI
401: FDIGGDTSSE GGDKKSTEHS HKLHMHWIDV GDLKHDLDMQ AEDGYIALEA LSEVLHSTQP LIVYFPDSSQ WLSRAVPKSK QNEFVDKVQE MFDKLSSPVV
501: MICGRNKIET GSKEREKFTM ILPNFGRLAK LPLPLKRLTE GLTGRKTSED NEIYKLFTNV MNLVPPKEEE NLIVFNKQLG EDRRIVMSRS NLNELLKALE
601: ENELLCTDLY QVNTDGVILT KQRAEKVIGW ARNHYLSSCP SPSIKEGRLI LPRESIEISV KRLKAQEDIS RKPTQNLKNI AKDEFETNFV SAVVAPGEIG
701: VKFDDIGALE HVKKTLNELV ILPMRRPELF TRGNLLRPCK GILLFGPPGT GKTLLAKALA TEAGANFISI TGSTLTSKWF GDAEKLTKAL FSFASKLAPV
801: IIFVDEVDSL LGARGGAFEH EATRRMRNEF MAAWDGLRSK DSQRILILGA TNRPFDLDDA VIRRLPRRIY VDLPDAENRL KILKIFLTPE NLETGFEFDK
901: LAKETEGYSG SDLKNLCIAA AYRPVQELLQ EENKDSVTNA SPDLRPLSLD DFIQSKAKVS PSVAYDATTM NELRKWNEQY GEGGTRTKSP FGF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.