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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY37590 Canola cytosol 90.44 92.56
CDX79393 Canola cytosol 93.5 92.44
CDY38662 Canola cytosol 91.01 92.25
Bra008479.1-P Field mustard cytosol 92.54 91.67
CDY57698 Canola cytosol 92.93 91.53
Bra003561.1-P Field mustard cytosol 92.73 91.34
VIT_09s0002g05260.t01 Wine grape cytosol 85.09 85.41
PGSC0003DMT400042654 Potato cytosol 84.51 85.33
Solyc06g066810.2.1 Tomato cytosol 84.32 85.14
KRH47511 Soybean cytosol 84.32 83.05
KRH44395 Soybean cytosol 84.51 82.93
Os01t0683100-01 Rice extracellular 81.07 81.7
Zm00001d011611_P005 Maize cytosol 79.92 81.01
EES01274 Sorghum cytosol 79.73 80.35
KRH09800 Soybean cytosol 72.85 79.71
TraesCS3B01G299100.1 Wheat cytosol 79.35 79.65
TraesCS3D01G265900.1 Wheat cytosol 79.35 79.65
HORVU3Hr1G063300.1 Barley cytosol 79.16 79.46
TraesCS3A01G265700.1 Wheat cytosol 79.16 79.46
KXG19781 Sorghum cytosol 69.6 68.42
GSMUA_Achr4P00810_001 Banana cytosol 78.2 66.94
Zm00001d043841_P003 Maize cytosol 79.73 46.13
AT2G34560.2 Thale cress cytosol 30.02 39.95
AT2G27600.1 Thale cress cytosol 29.83 35.86
AT2G45500.5 Thale cress cytosol 28.68 30.18
AT4G27680.1 Thale cress endoplasmic reticulum, plasma membrane 20.84 27.39
AT5G53540.1 Thale cress endoplasmic reticulum 20.27 26.3
AT3G27120.1 Thale cress nucleus 31.17 23.97
AT5G52882.1 Thale cress extracellular, vacuole 26.96 17.01
AT4G28000.2 Thale cress extracellular 26.39 16.59
AT1G64110.2 Thale cress cytosol 26.0 16.41
AT1G50140.1 Thale cress mitochondrion 26.58 13.86
AT3G19740.1 Thale cress cytosol, mitochondrion, plastid 26.0 13.7
AT4G24860.1 Thale cress cytosol, plastid 26.96 12.57
AT1G02890.1 Thale cress plastid 29.64 12.44
AT1G62130.1 Thale cress cytosol, plastid 24.28 12.18
AT4G02480.1 Thale cress plastid 29.45 12.17
Protein Annotations
Gene3D:1.10.8.60Gene3D:1.20.58.280MapMan:13.4.4.2.1Gene3D:3.40.50.300EntrezGene:844375UniProt:A0A178WF59
InterPro:AAA+_ATPaseProteinID:AAG52435.1ProteinID:AAK54074.1EMBL:AB044785ProteinID:AEE36390.1EMBL:AF048706
EMBL:AF358779EMBL:AK228515ArrayExpress:AT1G80350EnsemblPlantsGene:AT1G80350RefSeq:AT1G80350TAIR:AT1G80350
RefSeq:AT1G80350-TAIR-GEnsemblPlants:AT1G80350.1TAIR:AT1G80350.1InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEMBL:AY059919
Unigene:At.11879EMBL:BT000149Symbol:ERH3GO:GO:0000166GO:GO:0000226GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005856GO:GO:0005874GO:GO:0008017
GO:GO:0008150GO:GO:0008568GO:GO:0009653GO:GO:0009825GO:GO:0009832GO:GO:0009987
GO:GO:0010091GO:GO:0016043GO:GO:0016049GO:GO:0016787GO:GO:0016887GO:GO:0030154
GO:GO:0040007GO:GO:0043622GO:GO:0051013InterPro:KATNA1HAMAP:MF_03023RefSeq:NP_178151.1
ProteinID:OAP16053.1InterPro:P-loop_NTPasePFAM:PF00004PFAM:PF09336PO:PO:0000013PO:PO:0000037
PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281ScanProsite:PS00674PANTHER:PTHR23074PANTHER:PTHR23074:SF19UniProt:Q0WR11UniProt:Q9SEX2
SMART:SM00382SUPFAM:SSF52540UniParc:UPI00000AC041InterPro:Vps4_CSEG:seg:
Description
AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
Coordinates
chr1:-:30205314..30208268
Molecular Weight (calculated)
57239.4 Da
IEP (calculated)
7.411
GRAVY (calculated)
-0.586
Length
523 amino acids
Sequence
(BLAST)
001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.