Factsheet for TraesCS3D01G265900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G299100.1	Wheat	cytosol	100.0	100.0
TraesCS3A01G265700.1	Wheat	cytosol	99.62	99.62
HORVU3Hr1G063300.1	Barley	cytosol	98.85	98.85
Os01t0683100-01	Rice	extracellular	91.55	91.91
EES01274	Sorghum	cytosol	90.79	91.14
Zm00001d011611_P005	Maize	cytosol	90.21	91.09
VIT_09s0002g05260.t01	Wine grape	cytosol	80.61	80.61
AT1G80350.1	Thale cress	cytosol	79.65	79.35
Solyc06g066810.2.1	Tomato	cytosol	78.69	79.15
CDY37590	Canola	cytosol	77.54	79.06
PGSC0003DMT400042654	Potato	cytosol	78.31	78.76
CDY38662	Canola	cytosol	77.74	78.49
KRH44395	Soybean	cytosol	80.04	78.24
KRH09800	Soybean	cytosol	71.59	78.03
KRH47511	Soybean	cytosol	79.27	77.78
Bra008479.1-P	Field mustard	cytosol	78.5	77.46
CDX79393	Canola	cytosol	78.31	77.13
CDY57698	Canola	cytosol	78.12	76.65
Bra003561.1-P	Field mustard	cytosol	77.93	76.46
KXG19781	Sorghum	cytosol	75.62	74.06
GSMUA_Achr4P00810_001	Banana	cytosol	81.38	69.39
Zm00001d043841_P003	Maize	cytosol	90.79	52.32
TraesCS3D01G271500.1	Wheat	cytosol	30.9	40.25
TraesCS3D01G053600.1	Wheat	cytosol	29.37	34.93
TraesCS3D01G294200.1	Wheat	plastid	29.37	34.54
TraesCS6D01G122900.1	Wheat	cytosol	28.21	33.64
TraesCS7D01G060200.1	Wheat	cytosol	28.98	31.66
TraesCS7D01G381400.1	Wheat	endoplasmic reticulum	21.11	29.57
TraesCS5D01G123800.1	Wheat	nucleus	30.33	22.97
TraesCS3D01G159200.1	Wheat	cytosol, vacuole	27.06	16.87
TraesCS3D01G228100.4	Wheat	cytosol	25.91	16.81
TraesCS1D01G431700.1	Wheat	mitochondrion	27.26	16.69
TraesCS7D01G127200.1	Wheat	cytosol	26.1	13.77
TraesCS7D01G186200.1	Wheat	mitochondrion	24.76	13.27
TraesCS6D01G284600.1	Wheat	mitochondrion	24.95	13.22
TraesCS2D01G114500.1	Wheat	cytosol, plastid	27.64	12.7
TraesCS4D01G168600.1	Wheat	cytosol	26.87	12.65
TraesCS4D01G145100.12	Wheat	plastid	27.26	11.56

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:13.4.4.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0000226	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0008017	GO:GO:0008150	GO:GO:0008568	GO:GO:0009653
GO:GO:0009825	GO:GO:0009832	GO:GO:0009987	GO:GO:0010091	GO:GO:0016043	GO:GO:0016049
GO:GO:0016787	GO:GO:0030154	GO:GO:0040007	GO:GO:0043622	GO:GO:0051013	InterPro:KATNA1
HAMAP:MF_03023	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074
PANTHER:PTHR23074:SF19	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G265900	EnsemblPlants:TraesCS3D01G265900.1	InterPro:Vps4_C
TIGR:cd00009	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:368881761..368887053

Molecular Weight (calculated)

57255.3 Da

IEP (calculated)

7.814

GRAVY (calculated)

-0.579

Length

521 amino acids

Sequence
(BLAST)

001: MANPLAGLQD HLKHARDYAL EGLYDTSIIF FDGAIAQINK HLANLDDTFI RTKWMNCKKA ISEEVEIVRQ LDAQLKSFKE APGTMRSSSP PIRSNNKSFL
101: FQPLDEYPTS SPSTFDDPDV WAPPRDTNTP NRRSARGQSS ARKSSQDGAW ARGPSKTGTP SRGAKPSGSK ASSAVRSSTA SSTGGRKGKS SSSKADSASS
201: DAEEGKSKKA QYEGPDGDLA AMLERDVLDS TPGVRWDDVA GLSEAKRLLE EAVVLPLWMP EYFQGIRRPW KGVLMFGPPG TGKTLLAKAV ATECGTTFFN
301: VSSATLASKW RGESERMVRC LFELARAYAP STIFIDEIDS LCTSRGASGE HESSRRVKSE LLVQIDGVNN SSTNEDGQPK IVMVLAATNF PWDIDEALRR
401: RLEKRIYIPL PSFESRKSLI SINLRTVEVA TDVNIDEVAR RTEGYSGDDL TNVCRDASMN GMRRKIAGKT RDEIKNMSKD DISKDPVAMC DFEEALVKVQ
501: KSVSPSDIER HEKWMAEFGS A

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.