Factsheet for PGSC0003DMT400042654

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g066810.2.1	Tomato	cytosol	98.26	98.26
AT1G80350.1	Thale cress	cytosol	85.33	84.51
VIT_09s0002g05260.t01	Wine grape	cytosol	84.36	83.88
CDY37590	Canola	cytosol	82.63	83.76
CDY38662	Canola	cytosol	82.63	82.95
Bra008479.1-P	Field mustard	cytosol	84.17	82.58
CDX79393	Canola	cytosol	83.59	81.85
KRH47511	Soybean	cytosol	83.59	81.54
CDY57698	Canola	cytosol	83.4	81.36
Bra003561.1-P	Field mustard	cytosol	83.2	81.17
KRH44395	Soybean	cytosol	83.4	81.05
Os01t0683100-01	Rice	extracellular	81.08	80.92
Zm00001d011611_P005	Maize	cytosol	79.54	79.84
EES01274	Sorghum	cytosol	79.73	79.58
KRH09800	Soybean	cytosol	72.39	78.45
TraesCS3D01G265900.1	Wheat	cytosol	78.76	78.31
TraesCS3B01G299100.1	Wheat	cytosol	78.76	78.31
TraesCS3A01G265700.1	Wheat	cytosol	78.57	78.12
HORVU3Hr1G063300.1	Barley	cytosol	78.38	77.93
GSMUA_Achr4P00810_001	Banana	cytosol	80.31	68.09
KXG19781	Sorghum	cytosol	68.73	66.92
PGSC0003DMT400071442	Potato	cytosol	33.2	52.76
Zm00001d043841_P003	Maize	cytosol	79.92	45.8
PGSC0003DMT400054532	Potato	cytosol	30.31	40.46
PGSC0003DMT400050194	Potato	cytosol	30.7	36.55
PGSC0003DMT400019119	Potato	cytosol	15.25	36.41
PGSC0003DMT400019113	Potato	cytosol	30.12	36.11
PGSC0003DMT400047633	Potato	endoplasmic reticulum	21.43	29.37
PGSC0003DMT400031598	Potato	endoplasmic reticulum	20.27	29.25
PGSC0003DMT400013963	Potato	endoplasmic reticulum	20.46	27.04
PGSC0003DMT400052226	Potato	nucleus	31.27	24.25
PGSC0003DMT400031731	Potato	cytosol, endoplasmic reticulum	29.54	18.35
PGSC0003DMT400051401	Potato	endoplasmic reticulum	26.64	16.63

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	EntrezGene:102585178	MapMan:13.4.4.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0000226	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008568
GO:GO:0009653	GO:GO:0009825	GO:GO:0009832	GO:GO:0009987	GO:GO:0010091	GO:GO:0016043
GO:GO:0016049	GO:GO:0016787	GO:GO:0030154	GO:GO:0040007	GO:GO:0043622	GO:GO:0051013
InterPro:KATNA1	UniProt:M1BDF0	HAMAP:MF_03023	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336
EnsemblPlantsGene:PGSC0003DMG400016543	PGSC:PGSC0003DMG400016543	EnsemblPlants:PGSC0003DMT400042654	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002959CE6	InterPro:Vps4_C	RefSeq:XP_006356176.1	SEG:seg

Description

Katanin [Source:PGSC_GENE;Acc:PGSC0003DMG400016543]

Coordinates

chr6:-:49502255..49508662

Molecular Weight (calculated)

56826.2 Da

IEP (calculated)

7.861

GRAVY (calculated)

-0.561

Length

518 amino acids

Sequence
(BLAST)

001: MVGASLAGLQ DHLKLAREYA VEGLYDTSVI FFDGAIAQIN KHVNTLDDPL IRSKWMNAKK SISEETEVVK QLDAEKRAFK EIPMGRRPNS PPISTKSSFV
101: FQPLDEYPTS SGAPMDDPDV WRPPSRDTTR RPGRAGQGGM RKSPQDGAWA RASTTRTGTT SRGGRTSGST KAATGIRSST TGKKAPGKSA KSDSTDGEPE
201: EGKSKKGQYE GPDADLAAML ERDVLDNSPG VRWDDVAGLS EAKRLLEEAV VLPLWMPEYF QGIRRPWKGV LMFGPPGTGK TLLAKAVATE CGTTFFNVSS
301: ATLASKWRGE SERMVRCLFD LARSYAPSTI FIDEIDSLCN SRGGSGEHES SRRVKSELLV QVDGVSNSAT NEDGTRKIVM VLAATNFPWD IDEALRRRLE
401: KRIYIPLPNF ESRKELIKIN LKSIEVAADV DIDEVARKTE GYSGDDLTNV CRDASMNGMR RKIAGKTREE IKNMAKDDIA KDPVAMCDFV EAISKVQPSV
501: SAADIEKHEK WFAEFGSA

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.