Factsheet for PGSC0003DMT400071442

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013570.1.1	Tomato	cytosol	61.66	66.34
Solyc11g013700.1.1	Tomato	cytosol	65.03	53.54
Solyc11g013650.1.1	Tomato	cytosol	52.45	48.58
Solyc11g050800.1.1	Tomato	cytosol	43.56	45.08
Solyc10g019190.1.1	Tomato	cytosol	43.56	40.0
Solyc11g050880.1.1	Tomato	cytosol	60.74	39.21
Solyc12g040520.1.1	Tomato	cytosol	60.74	37.29
PGSC0003DMT400042654	Potato	cytosol	52.76	33.2
PGSC0003DMT400054532	Potato	cytosol	38.34	32.22
PGSC0003DMT400019119	Potato	cytosol	19.94	29.95
PGSC0003DMT400050194	Potato	cytosol	37.12	27.82
PGSC0003DMT400019113	Potato	cytosol	36.5	27.55
PGSC0003DMT400031598	Potato	endoplasmic reticulum	26.38	23.96
PGSC0003DMT400047633	Potato	endoplasmic reticulum	26.38	22.75
PGSC0003DMT400013963	Potato	endoplasmic reticulum	26.07	21.68
PGSC0003DMT400052226	Potato	nucleus	32.82	16.02
PGSC0003DMT400031731	Potato	cytosol, endoplasmic reticulum	29.14	11.39
PGSC0003DMT400051401	Potato	endoplasmic reticulum	27.61	10.84

Protein Annotations

EnsemblPlants:PGSC0003DMT400071442	EnsemblPlantsGene:PGSC0003DMG400027796	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	PFAM:PF00004	PGSC:PGSC0003DMG400027796	ScanProsite:PS00674	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI000294FC7A	UniProt:M1CNT0	MapMan:50.3.6	:	:

Description

Katanin p60 ATPase-containing subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400027796]

Coordinates

chr11:-:9515426..9519182

Molecular Weight (calculated)

37162.2 Da

IEP (calculated)

9.189

GRAVY (calculated)

-0.170

Length

326 amino acids

Sequence
(BLAST)

001: LYDGPHPESA ARLEKEILET NPGVKWDDIA GLSEAKRILQ EAMVFPLLMP EYFQGIRRPW RGVLMFGPPR TGKTLLAKAV ATECGTTFLN ISCSSLSGEW
101: YGESERLTWC LFEIARTHAP TTIFIDEIDS LCSARGSATE HEASRRVKAE LLVQIDGLTN SNNTSGKMVA VLAATNFPES LDEALRRRLE KRIYIPLPDF
201: KSRKELIKIN LKSIKYDDYW RRYLVKGDSI GLQSYISNSV FPNLKNVKIV ISSGMCMKEH LKWEYIKKLF KLSDFLLENV VVLEKFVIIS NRRRCEICGI
301: KCVSRLSWRL ANKLRSSADS VIIFQD

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.