Factsheet for Solyc12g040520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g050880.1.1	Tomato	cytosol	87.01	91.49
Solyc10g019190.1.1	Tomato	cytosol	57.06	85.35
Solyc11g013570.1.1	Tomato	cytosol	44.44	77.89
Solyc11g013700.1.1	Tomato	cytosol	52.35	70.2
Solyc11g013650.1.1	Tomato	cytosol	46.14	69.6
Solyc11g050800.1.1	Tomato	cytosol	41.24	69.52
PGSC0003DMT400071442	Potato	cytosol	37.29	60.74
Solyc06g066810.2.1	Tomato	cytosol	44.82	45.95
Solyc02g070440.2.1	Tomato	cytosol	27.68	38.08
Solyc11g007170.1.1	Tomato	cytosol	26.74	35.15
Solyc11g067230.1.1	Tomato	cytosol	27.12	33.33
Solyc11g067240.1.1	Tomato	plastid	26.93	33.1
Solyc01g094150.2.1	Tomato	nucleus	26.37	28.51
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	17.89	25.2
Solyc08g083020.2.1	Tomato	plastid	16.57	24.51
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	17.89	24.23
Solyc02g094100.2.1	Tomato	nucleus	26.93	21.41
Solyc06g071980.2.1	Tomato	cytosol	23.54	16.45
Solyc08g081740.2.1	Tomato	unclear	24.29	15.43
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	22.41	14.41
Solyc06g072000.1.1	Tomato	plastid	23.54	12.17
Solyc02g014350.2.1	Tomato	mitochondrion	22.22	11.84
Solyc03g110900.2.1	Tomato	nucleus	25.42	11.3
Solyc09g074950.2.1	Tomato	plastid	25.8	11.08
Solyc06g084530.2.1	Tomato	extracellular, nucleus	25.61	10.87

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
InterPro:EF_hand_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005509
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008568
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0051013	InterPro:IPR002048
UniProt:K4DEU6	InterPro:KATNA1	HAMAP:MF_03023	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336
ScanProsite:PS00674	PFscan:PS50222	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc12g040520.1	EnsemblPlants:Solyc12g040520.1.1	UniParc:UPI000276A7E4	InterPro:Vps4_C	SEG:seg	:

Description

Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:K4DEU6]

Coordinates

chr12:+:43702787..43707077

Molecular Weight (calculated)

59300.9 Da

IEP (calculated)

7.052

GRAVY (calculated)

-0.442

Length

531 amino acids

Sequence
(BLAST)

001: MVGVDAAKSK EEKMKIIFDK FDVNKDSHLG ITELLGWIMA VEPTLSNDLQ RLPFLLQIYL GNPSFLAGSK GLSYSGFTNI YEEGHRNIDH DFNTINIQPP
101: IHQGYVVRGI LQQQQQRSLM LQSQLQQQQQ YQQQEQHRSW MLQSQLVQQQ AQQRASLATN TFSNNHRNTT QQVGGGISSA GPVSNIGITA QQMGGNLNSA
201: DEVNKNVNPA EQENAVKDVK SKVKYDGSHP KLAARLEKEI LDTNPGVKWD DVAGLSEAKR ILQETVVLPL FMPEYFQGIR RPSRGVLMFG PPGTGKTLLA
301: KAVATECGMT FMNISCSSLC GNWYGESERL TRCLFELARA HAPTMIFIDE IDSLCSVRGS ATKHETSRRL KSELLVQIDG LNNSNSTSGK MVTLLAATNF
401: PGNLDEALRR RLEKRIYIPL PDFETRKELI QINLKLIELA PEVDIEQVAQ KTEGYSGDDL TNICRDASLN GMRQKIAGKT IDESKNILKS EILKIPVTME
501: DFLEAVDKIK PTVSSGDIQR HQKWYSEFGS S

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.