Factsheet for Solyc01g094150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g01720.t01	Wine grape	cytosol	74.95	74.95
Bra004917.1-P	Field mustard	cytosol	47.45	73.04
CDY18925	Canola	plastid	52.34	70.99
KRH00594	Soybean	cytosol, plastid	69.86	69.86
KRH40573	Soybean	cytosol, plastid	68.64	69.34
CDX74745	Canola	cytosol	65.99	68.21
AT2G45500.5	Thale cress	cytosol	66.8	66.0
TraesCS7D01G060200.1	Wheat	cytosol	63.95	65.83
TraesCS4A01G422400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.15	65.62
Bra039332.1-P	Field mustard	cytosol	58.04	65.22
TraesCS7A01G065800.1	Wheat	cytosol	63.75	65.21
Os06t0130000-02	Rice	cytosol	64.15	64.68
EER87773	Sorghum	cytosol	62.12	62.24
CDY37046	Canola	cytosol	64.56	62.04
Zm00001d045483_P002	Maize	cytosol	62.32	61.45
GSMUA_Achr10P...	Banana	cytosol	62.73	59.23
HORVU7Hr1G013190.8	Barley	plastid	63.75	55.99
CDY27380	Canola	nucleus	65.58	43.4
Solyc11g013570.1.1	Tomato	cytosol	24.03	38.94
Solyc11g067240.1.1	Tomato	plastid	32.59	37.04
Solyc11g067230.1.1	Tomato	cytosol	32.59	37.04
Solyc11g007170.1.1	Tomato	cytosol	30.35	36.88
Solyc02g070440.2.1	Tomato	cytosol	28.92	36.79
Solyc11g013700.1.1	Tomato	cytosol	26.48	32.83
Solyc11g050800.1.1	Tomato	cytosol	20.16	31.43
Solyc03g082630.2.1	Tomato	endoplasmic reticulum	23.83	31.03
Solyc11g013650.1.1	Tomato	cytosol	21.79	30.4
Solyc06g066810.2.1	Tomato	cytosol	31.57	29.92
Solyc08g083020.2.1	Tomato	plastid	21.79	29.8
Solyc06g053160.2.1	Tomato	endoplasmic reticulum, plasma membrane	23.63	29.59
Solyc10g019190.1.1	Tomato	cytosol	21.18	29.3
Solyc11g050880.1.1	Tomato	cytosol	27.49	26.73
Solyc12g040520.1.1	Tomato	cytosol	28.51	26.37
Solyc02g094100.2.1	Tomato	nucleus	35.44	26.05
Solyc06g071980.2.1	Tomato	cytosol	28.72	18.55
Solyc08g081740.2.1	Tomato	unclear	30.14	17.7
Solyc03g007760.2.1	Tomato	endoplasmic reticulum	29.33	17.43
Solyc02g014350.2.1	Tomato	mitochondrion	29.94	14.74
Solyc06g072000.1.1	Tomato	plastid	28.51	13.63
Solyc03g110900.2.1	Tomato	nucleus	31.16	12.8
Solyc06g084530.2.1	Tomato	extracellular, nucleus	31.36	12.31
Solyc09g074950.2.1	Tomato	plastid	30.75	12.21

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887
UniProt:K4AZF6	InterPro:MIT	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23074
PANTHER:PTHR23074:SF86	SMART:SM00382	SMART:SM00745	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g094150.2	EnsemblPlants:Solyc01g094150.2.1
UniParc:UPI00027687A8	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:85697546..85707695

Molecular Weight (calculated)

53820.0 Da

IEP (calculated)

9.966

GRAVY (calculated)

-0.441

Length

491 amino acids

Sequence
(BLAST)

001: MSFLKDLAET LSSIFSDTPS SPSSLNHPQE NSGDRTMDGV ATGNERTAYK LKGYFELAKE EIAKAVRAEE WGLADEAIAH YHNSQKILAE GISTPVPSYI
101: ASSEHEKVKS YRQKISKWQS QVSDRLQTLS RRAGGTPSVK QSEPQSQRVA VSQSSSSARK GASLSAPSSG KVSSATRVPS NRISSHKPSQ ESATADGSDP
201: KLVEMINSVI VDRSPSVKWE DIAGLEKAKQ ALLEMVILPT KRKDLFTGLR KPARGLLLFG PPGTGKTMLA KAVASESQAT FFNVSASSLT SKWVGEGEKL
301: VKTLFMVAIS RQPSVIFMDE IDSIMSTRTT NENEASRRLK SEFLVQFDGV TSNSEGLVIV IGATNKPQEL DDAVLRRLVK RIYIPLPDAS VRRQLLKHRL
401: KGKAFSLPGG DLERLVRDTE GYSGSDLQAL CEEAAMMPIR ELGANILSVQ ANQVRGLRYG DFQKAMTVIR PSLQKSKWEE LEKWNQEFGA N

Best Arabidopsis Sequence Match ( AT2G45500.1 )
(BLAST)

001: MSFLRGIIDS FSSILNEESK KDPSVSSSST SSESMNGIDG VPVTNERIAY KLKGYFDLAK EEIAKGVRAE EWGLHDDALL HYRNAQRIMN EATSTPSPSY
101: ISSSEKEKVR SYREKISNWQ NQVSERLQAL GKRTGVGMSE NKRTVAYPSS ASVSSTASRY RKTLSQKTPV ARGGVATPRN PKDAAASPKP VKESGNVYDD
201: KLVEMINTTI VDRSPSVKWD DVAGLNGAKQ ALLEMVILPA KRRDLFTGLR RPARGLLLFG PPGNGKTMLA KAVASESQAT FFNVSASSLT SKWVGEAEKL
301: VKTLFQVAIS RQPSVIFMDE IDSIMSTRST SENEASRRLK SEFLIQFDGV TSNPDDLVII IGATNKPQEL DDAVLRRLVK RIYVPLPDSN VRKLLFKTKL
401: KCQPHSLSDG DIDKIVKETE GYSGSDLQAL CEEAAMMPIR ELGANILTIQ ANKVRSLRYD DFRKSMAVIR PSLSKSKWEE LERWNSEFGS N

Arabidopsis Description

AAA-type ATPase family protein [Source:TAIR;Acc:AT2G45500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.