CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37046	Canola	cytosol	64.42	93.54
CDY18925	Canola	plastid	45.28	92.82
CDX74745	Canola	cytosol	58.49	91.37
AT2G45500.5	Thale cress	cytosol	56.47	84.31
KRH40573	Soybean	cytosol, plastid	47.17	72.02
KRH00594	Soybean	cytosol, plastid	46.9	70.88
VIT_15s0048g01720.t01	Wine grape	cytosol	46.23	69.86
TraesCS7D01G060200.1	Wheat	cytosol	42.99	66.88
TraesCS4A01G422400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.13	66.67
TraesCS7A01G065800.1	Wheat	cytosol	42.99	66.46
Os06t0130000-02	Rice	cytosol	43.13	65.71
Solyc01g094150.2.1	Tomato	nucleus	43.4	65.58
EER87773	Sorghum	cytosol	43.26	65.51
Zm00001d045483_P002	Maize	cytosol	43.4	64.66
HORVU7Hr1G013190.8	Barley	plastid	45.42	60.29
GSMUA_Achr10P...	Banana	cytosol	40.97	58.46
CDX84641	Canola	cytosol	18.73	37.07
CDX79566	Canola	cytosol	18.73	36.97
CDY17260	Canola	cytosol	18.87	36.55
CDX84306	Canola	cytosol	18.73	36.01
CDX93578	Canola	cytosol	20.75	35.81
CDX95077	Canola	cytosol	20.75	35.73
CDY31186	Canola	cytosol	20.89	35.71
CDX83275	Canola	cytosol	20.62	35.33
CDX71438	Canola	cytosol	20.35	35.2
CDY04504	Canola	cytosol	20.49	35.19
CDY38662	Canola	cytosol	20.89	30.04
CDY37590	Canola	cytosol	20.62	29.94
CDY38752	Canola	endoplasmic reticulum	15.36	29.53
CDX79393	Canola	cytosol	21.02	29.49
CDY57698	Canola	cytosol	21.02	29.38
CDY47077	Canola	endoplasmic reticulum, plasma membrane	15.09	28.79
CDY14372	Canola	endoplasmic reticulum	15.36	28.72
CDY24618	Canola	endoplasmic reticulum	10.78	28.47
CDY20251	Canola	endoplasmic reticulum	15.36	28.36
CDY30236	Canola	endoplasmic reticulum	14.69	27.81
CDY55344	Canola	endoplasmic reticulum	14.69	27.81
CDY29857	Canola	endoplasmic reticulum, plasma membrane	14.56	27.62
CDX92836	Canola	endoplasmic reticulum, plasma membrane	14.56	27.62
CDY19035	Canola	endoplasmic reticulum	14.56	27.55
CDY71574	Canola	endoplasmic reticulum, plasma membrane	14.56	27.55
CDY28494	Canola	plastid	23.58	27.01
CDY34176	Canola	plastid	23.45	26.85
CDX92656	Canola	cytosol	13.75	23.67
CDX96166	Canola	cytosol	17.39	19.0
CDY49165	Canola	extracellular, plasma membrane	18.6	17.67
CDY56163	Canola	extracellular, vacuole	19.14	17.64
CDY51824	Canola	extracellular, plasma membrane	19.0	17.49
CDY19639	Canola	extracellular, vacuole	18.87	17.43
CDY38192	Canola	plasma membrane	19.27	17.21
CDY08360	Canola	endoplasmic reticulum	19.27	17.21
CDY45052	Canola	mitochondrion	19.41	14.41
CDY03591	Canola	cytosol, mitochondrion, plastid	19.27	14.31
CDY33415	Canola	cytosol, mitochondrion	19.27	14.07
CDY42204	Canola	cytosol, mitochondrion, plastid	19.27	13.74
CDX89214	Canola	extracellular, plasma membrane	14.02	13.72
CDX91317	Canola	plastid	19.41	13.61
CDY32485	Canola	plastid	19.54	13.16
CDX90936	Canola	plastid	19.14	12.98
CDX89933	Canola	plastid	19.81	12.72
CDX97266	Canola	plastid	19.27	12.64
CDY50381	Canola	plastid	19.95	12.32
CDY22053	Canola	plastid	20.35	12.29
CDY18129	Canola	cytosol, plastid	20.08	12.27
CDY29873	Canola	endoplasmic reticulum, extracellular, plasma membrane	11.46	12.13
CDY19014	Canola	endoplasmic reticulum, extracellular	11.73	12.12
CDX92857	Canola	endoplasmic reticulum, extracellular, plasma membrane	11.46	12.07
CDY18018	Canola	plastid	19.54	11.89
CDX89934	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	Gene3D:3.40.50.300	MapMan:50.3.6	GO:A0A078GLA8	UniProt:A0A078GLA8
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlants:CDY27380	ProteinID:CDY27380	ProteinID:CDY27380.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00037326001	InterPro:MIT
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF86	SMART:SM00382
SMART:SM00745	SUPFAM:SSF52540	UniParc:UPI0004EE39D2	SEG:seg	:	:

Description

BnaC04g50250DBnaC04g50250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLA8]

Coordinates

chrLK032203:+:356987..363324

Molecular Weight (calculated)

82877.7 Da

IEP (calculated)

10.420

GRAVY (calculated)

-0.777

Length

742 amino acids

Sequence
(BLAST)

001: MGGKGKKRRE KNYLASHGGP ARLPPPPDRS KQDALPSKLR VLMNYTSPPP PQDSTKPVVD KKEKKAKAGV DAVKSAKPGS EAKSVEERKS EGNTTSSDHE
101: NDGDDITLNK GDDKKKKKRK RNEIKDLRFE QELAELDGRS KRKERKKKYW EAKKQKKKGK TEDTLRENFP KHEQIRFGDV VQAPPKLAVV PKARKTPMSA
201: SKERLRLEAI EAYRSRNGWT SRPGVQIPAF PTHSIILIRF DSSRTMNSIS EQNMVNMSFL RGIIDSFSSI FTEEEEEDIT NRHEVSKHDP TESTSSDSMN
301: SSVNGGSVTN ERVAYKLKGY FDLAKEEIAK GVRAEEWGLH DDALLHYRNA QRIMNEATST PSPSYITSSE KEKVRSYREK ISKWQSQVSG RLQALSKRTG
401: VGMSENKRPV PSPSLASVPS SNRRVSLPRT SLPRGGTGMA RSPKDATTTN PKPVKEAGSG YDDKLVEMIN TTIVDRSPSV KWDDVAGLDG AKQALMEMVI
501: LPAKRRDLFT GLRRPARGLL LFGPPGNGKT MLAKAVASES QATFFNVSAS SLTSKWVGEA EKLVKTLFQV AISRQPSVIF MDEIDSIMST RSISENEASR
601: RLKSEFLIQF DGVTSNPDDL VIVIGATNKP QELDDAVLRR LVKRIYVPLP DSNVRKLLFK TKLKCQPHSL SGYSGSDLQA LCEEAAMMPI RELGADILTI
701: QANKVRPLRY DDFRKSMGAI RPSLSKSKWE ELERWNSEFG SN

Best Arabidopsis Sequence Match ( AT2G45500.1 )
(BLAST)

001: MSFLRGIIDS FSSILNEESK KDPSVSSSST SSESMNGIDG VPVTNERIAY KLKGYFDLAK EEIAKGVRAE EWGLHDDALL HYRNAQRIMN EATSTPSPSY
101: ISSSEKEKVR SYREKISNWQ NQVSERLQAL GKRTGVGMSE NKRTVAYPSS ASVSSTASRY RKTLSQKTPV ARGGVATPRN PKDAAASPKP VKESGNVYDD
201: KLVEMINTTI VDRSPSVKWD DVAGLNGAKQ ALLEMVILPA KRRDLFTGLR RPARGLLLFG PPGNGKTMLA KAVASESQAT FFNVSASSLT SKWVGEAEKL
301: VKTLFQVAIS RQPSVIFMDE IDSIMSTRST SENEASRRLK SEFLIQFDGV TSNPDDLVII IGATNKPQEL DDAVLRRLVK RIYVPLPDSN VRKLLFKTKL
401: KCQPHSLSDG DIDKIVKETE GYSGSDLQAL CEEAAMMPIR ELGANILTIQ ANKVRSLRYD DFRKSMAVIR PSLSKSKWEE LERWNSEFGS N

Arabidopsis Description

AAA-type ATPase family protein [Source:TAIR;Acc:AT2G45500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.