Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003561.1-P | Field mustard | cytosol | 99.06 | 99.06 |
| CDX79393 | Canola | cytosol | 97.55 | 97.92 |
| CDY37590 | Canola | cytosol | 90.77 | 94.32 |
| CDY38662 | Canola | cytosol | 91.53 | 94.19 |
| AT1G80350.1 | Thale cress | cytosol | 91.53 | 92.93 |
| PGSC0003DMT400042654 | Potato | cytosol | 81.36 | 83.4 |
| Solyc06g066810.2.1 | Tomato | cytosol | 81.17 | 83.2 |
| VIT_09s0002g05260.t01 | Wine grape | cytosol | 81.17 | 82.73 |
| KRH44395 | Soybean | cytosol | 80.04 | 79.74 |
| KRH47511 | Soybean | cytosol | 79.66 | 79.66 |
| Os01t0683100-01 | Rice | extracellular | 77.78 | 79.58 |
| Zm00001d011611_P005 | Maize | cytosol | 77.02 | 79.26 |
| KRH09800 | Soybean | cytosol | 71.19 | 79.08 |
| EES01274 | Sorghum | cytosol | 77.02 | 78.81 |
| TraesCS3D01G265900.1 | Wheat | cytosol | 76.65 | 78.12 |
| TraesCS3B01G299100.1 | Wheat | cytosol | 76.65 | 78.12 |
| HORVU3Hr1G063300.1 | Barley | cytosol | 76.65 | 78.12 |
| TraesCS3A01G265700.1 | Wheat | cytosol | 76.46 | 77.93 |
| KXG19781 | Sorghum | cytosol | 67.61 | 67.48 |
| GSMUA_Achr4P00810_001 | Banana | cytosol | 75.33 | 65.47 |
| Zm00001d043841_P003 | Maize | cytosol | 77.02 | 45.24 |
| CDY17260 | Canola | cytosol | 29.19 | 40.47 |
| CDX84641 | Canola | cytosol | 28.25 | 40.0 |
| CDX84306 | Canola | cytosol | 29.0 | 39.9 |
| CDX79566 | Canola | cytosol | 28.06 | 39.63 |
| CDY18925 | Canola | plastid | 26.74 | 39.23 |
| CDX93578 | Canola | cytosol | 30.32 | 37.44 |
| CDX95077 | Canola | cytosol | 30.32 | 37.35 |
| CDX71438 | Canola | cytosol | 29.19 | 36.13 |
| CDY04504 | Canola | cytosol | 29.0 | 35.65 |
| CDX83275 | Canola | cytosol | 29.0 | 35.57 |
| CDY31186 | Canola | cytosol | 29.0 | 35.48 |
| CDX74745 | Canola | cytosol | 28.25 | 31.58 |
| CDY37046 | Canola | cytosol | 28.81 | 29.94 |
| CDY19035 | Canola | endoplasmic reticulum | 20.53 | 27.81 |
| CDY55344 | Canola | endoplasmic reticulum | 20.53 | 27.81 |
| CDY30236 | Canola | endoplasmic reticulum | 20.53 | 27.81 |
| CDY38752 | Canola | endoplasmic reticulum | 20.15 | 27.72 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 20.34 | 27.55 |
| CDX92836 | Canola | endoplasmic reticulum, plasma membrane | 20.15 | 27.37 |
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 20.15 | 27.37 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 19.96 | 27.25 |
| CDY14372 | Canola | endoplasmic reticulum | 19.96 | 26.7 |
| CDY20251 | Canola | endoplasmic reticulum | 20.15 | 26.62 |
| CDY24618 | Canola | endoplasmic reticulum | 13.75 | 25.98 |
| CDY34176 | Canola | plastid | 30.7 | 25.15 |
| CDY28494 | Canola | plastid | 30.7 | 25.15 |
| CDX92656 | Canola | cytosol | 19.77 | 24.36 |
| CDY27380 | Canola | nucleus | 29.38 | 21.02 |
| CDX96166 | Canola | cytosol | 24.67 | 19.29 |
| CDY49165 | Canola | extracellular, plasma membrane | 26.18 | 17.8 |
| CDY19639 | Canola | extracellular, vacuole | 26.55 | 17.56 |
| CDY56163 | Canola | extracellular, vacuole | 25.99 | 17.14 |
| CDY51824 | Canola | extracellular, plasma membrane | 25.8 | 17.0 |
| CDY08360 | Canola | endoplasmic reticulum | 25.24 | 16.13 |
| CDY38192 | Canola | plasma membrane | 25.05 | 16.0 |
| CDY32485 | Canola | plastid | 29.38 | 14.16 |
| CDX91317 | Canola | plastid | 27.87 | 13.99 |
| CDY03591 | Canola | cytosol, mitochondrion, plastid | 25.99 | 13.81 |
| CDY45052 | Canola | mitochondrion | 25.99 | 13.81 |
| CDX90936 | Canola | plastid | 28.44 | 13.8 |
| CDY33415 | Canola | cytosol, mitochondrion | 25.8 | 13.48 |
| CDX89214 | Canola | extracellular, plasma membrane | 19.21 | 13.46 |
| CDY42204 | Canola | cytosol, mitochondrion, plastid | 25.99 | 13.26 |
| CDX97266 | Canola | plastid | 28.06 | 13.17 |
| CDX89933 | Canola | plastid | 28.63 | 13.15 |
| CDY18129 | Canola | cytosol, plastid | 28.81 | 12.6 |
| CDY18018 | Canola | plastid | 28.44 | 12.38 |
| CDY50381 | Canola | plastid | 27.31 | 12.07 |
| CDY19014 | Canola | endoplasmic reticulum, extracellular | 16.2 | 11.98 |
| CDY22053 | Canola | plastid | 27.31 | 11.8 |
| CDX92857 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.63 | 11.79 |
| CDY29873 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.44 | 11.7 |
| CDX89934 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:1.20.58.280 | MapMan:13.4.4.2.1 | Gene3D:3.40.50.300 | GO:A0A078IZ83 | UniProt:A0A078IZ83 |
| InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EnsemblPlants:CDY57698 | ProteinID:CDY57698 | ProteinID:CDY57698.1 |
| ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008568 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0051013 | EnsemblPlantsGene:GSBRNA2T00022546001 | InterPro:KATNA1 | HAMAP:MF_03023 | InterPro:P-loop_NTPase |
| PFAM:PF00004 | PFAM:PF09336 | ScanProsite:PS00674 | PANTHER:PTHR23074 | PANTHER:PTHR23074:SF19 | SMART:SM00382 |
| SUPFAM:SSF52540 | UniParc:UPI0004EF10D5 | InterPro:Vps4_C | SEG:seg | : | : |
Description
BnaA07g38370DKatanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:A0A078IZ83]
Coordinates
chrLK033596:-:50614..53146
Molecular Weight (calculated)
57813.8 Da
IEP (calculated)
7.034
GRAVY (calculated)
-0.586
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGSTSSNNS LSGLQDHLKL AREYALEGSY DTSVIFFDGA IAQINKHLNS LDDATSRTKW MNVKKAVMEE TEVVKQLEAE RRAFKEAPTG RSRPSSPPIN
101: STKSSSFVFQ PLDEYPTSSS SSGAPMDDPD VWRPPTRDVA SRRPARAGQS GMRKSPNDGA WARGGGPTTR TAPATRGGRG GKSAAASARS SAVGKKGAAS
201: KSTKPESTSG DGEDGKSKRG LYDGPDEDLA AMLERDVLDS TPGVHWDDVA GLSEAKRLLE EAVVLPLWMP EYFQGIRRPW KGVLMFGPPG TGKTLLAKAV
301: ATECGTTFFN VSSATLASKW RGESERMVRC LFDLARAYAP STIFIDEIDS LCNSRGGSGE HESSRRVKSE LLVQVDGVSN TATNEDGSRK IVMVLAATNF
401: PWDIDEALRR RLEKRIYIPL PDLESRKALI NINLRTVEVA SDVNIEDVAR RTEGYSGDDL TNVCRDASMN GMRRKIAGKT RDEIKNMSKD DISNDPVAMC
501: DFEEAIKKVQ PSVSSSDIEK HEKWLSEFGS A
101: STKSSSFVFQ PLDEYPTSSS SSGAPMDDPD VWRPPTRDVA SRRPARAGQS GMRKSPNDGA WARGGGPTTR TAPATRGGRG GKSAAASARS SAVGKKGAAS
201: KSTKPESTSG DGEDGKSKRG LYDGPDEDLA AMLERDVLDS TPGVHWDDVA GLSEAKRLLE EAVVLPLWMP EYFQGIRRPW KGVLMFGPPG TGKTLLAKAV
301: ATECGTTFFN VSSATLASKW RGESERMVRC LFDLARAYAP STIFIDEIDS LCNSRGGSGE HESSRRVKSE LLVQVDGVSN TATNEDGSRK IVMVLAATNF
401: PWDIDEALRR RLEKRIYIPL PDLESRKALI NINLRTVEVA SDVNIEDVAR RTEGYSGDDL TNVCRDASMN GMRRKIAGKT RDEIKNMSKD DISNDPVAMC
501: DFEEAIKKVQ PSVSSSDIEK HEKWLSEFGS A
001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA
Arabidopsis Description
AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.