CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011611_P005	Maize	cytosol	96.53	97.09
Os01t0683100-01	Rice	extracellular	92.1	92.1
TraesCS3B01G299100.1	Wheat	cytosol	91.14	90.79
TraesCS3D01G265900.1	Wheat	cytosol	91.14	90.79
TraesCS3A01G265700.1	Wheat	cytosol	90.94	90.59
HORVU3Hr1G063300.1	Barley	cytosol	90.56	90.21
VIT_09s0002g05260.t01	Wine grape	cytosol	80.73	80.42
Solyc06g066810.2.1	Tomato	cytosol	80.15	80.31
AT1G80350.1	Thale cress	cytosol	80.35	79.73
PGSC0003DMT400042654	Potato	cytosol	79.58	79.73
KXG19781	Sorghum	cytosol	81.7	79.7
CDY37590	Canola	cytosol	78.23	79.45
CDY38662	Canola	cytosol	78.42	78.88
KRH09800	Soybean	cytosol	72.25	78.45
KRH44395	Soybean	cytosol	80.15	78.05
Bra008479.1-P	Field mustard	cytosol	79.19	77.84
KRH47511	Soybean	cytosol	79.58	77.78
CDX79393	Canola	cytosol	79.0	77.5
CDY57698	Canola	cytosol	78.81	77.02
Bra003561.1-P	Field mustard	cytosol	78.61	76.84
GSMUA_Achr4P00810_001	Banana	cytosol	81.31	69.07
Zm00001d043841_P003	Maize	cytosol	98.07	56.31
EES01499	Sorghum	cytosol	28.71	39.11
OQU87315	Sorghum	cytosol	29.48	37.97
EES00346	Sorghum	cytosol	29.48	35.09
EER87773	Sorghum	cytosol	28.52	30.2
KXG20883	Sorghum	endoplasmic reticulum	20.62	27.37
KXG23422	Sorghum	nucleus	29.48	22.24
KXG32842	Sorghum	cytosol	26.2	17.55
EES20020	Sorghum	endoplasmic reticulum	26.98	16.63
KXG32925	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	26.4	16.51
EES00021	Sorghum	endoplasmic reticulum	26.59	16.29
EES16128	Sorghum	cytosol, plastid	24.66	13.73
OQU76102	Sorghum	mitochondrion	25.43	13.64
EES05524	Sorghum	plastid	25.82	13.58
OQU79278	Sorghum	cytosol, plastid	23.51	13.23
EER92288	Sorghum	cytosol	27.75	12.97
OQU90457	Sorghum	cytosol, plastid	26.4	12.52
KXG29076	Sorghum	plastid	27.55	11.58

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:13.4.4.2.1	Gene3D:3.40.50.300	EntrezGene:8068028	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	UniProt:C5XGS4	ncoils:Coil	EnsemblPlants:EES01274	ProteinID:EES01274
ProteinID:EES01274.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008568	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0051013	InterPro:KATNA1	HAMAP:MF_03023
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19
SMART:SM00382	EnsemblPlantsGene:SORBI_3003G259400	SUPFAM:SSF52540	unigene:Sbi.2497	UniParc:UPI0001A84661	InterPro:Vps4_C
RefSeq:XP_002456154.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:59730528..59736796

Molecular Weight (calculated)

57016.4 Da

IEP (calculated)

8.337

GRAVY (calculated)

-0.533

Length

519 amino acids

Sequence
(BLAST)

001: MANPLAGLQD HIKLARDYAL EGLYDTSIIF FDGAIAQINK HLTTLDDALI RTKWMNCKKA ISEEVEIVKQ LDAQLKSLKE APGTRRSSSP PIRSNNKSFV
101: FQPLDEYPTS SPAPFDDPDV WAPPRDTPTR RPARGQSSAR KSSQDGAWAR GSARTGTPSR STKPNGSKGG STVKSSAASN SSVRKGKPSS SKADSASSDA
201: EEGKSKKGQY EGPDMDLAAM LERDVLDSTP GVRWDDVAGL SEAKRLLEEA VVLPLWMPEY FQGIRRPWKG VLMFGPPGTG KTLLAKAVAT ECGTTFFNVS
301: SATLASKWRG ESERMVRCLF DLARAYAPST IFIDEIDSLC TSRGASGEHE SSRRVKSELL VQIDGVNNSS TTEDGQPKIV MVLAATNFPW DIDEALRRRL
401: EKRIYIPLPD FESRKALINI NLRTVQIAAD VNIDEVARRT EGYSGDDLTN VCRDASMNGM RRKIAGKTRD EIKNMSKDEI AKDPVAMCDF VEALVKVQKS
501: VSPADIEKHE KWMTEFGSA

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.