CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23518	Soybean	cytosol	44.35	92.58
VIT_09s0002g05260.t01	Wine grape	cytosol	82.64	75.82
KRH44395	Soybean	cytosol	84.31	75.61
KRH47511	Soybean	cytosol	83.89	75.52
CDY37590	Canola	cytosol	78.87	73.78
Zm00001d011611_P005	Maize	cytosol	78.66	72.87
CDY38662	Canola	cytosol	78.66	72.87
AT1G80350.1	Thale cress	cytosol	79.71	72.85
Os01t0683100-01	Rice	extracellular	79.08	72.83
Solyc06g066810.2.1	Tomato	cytosol	78.87	72.78
PGSC0003DMT400042654	Potato	cytosol	78.45	72.39
EES01274	Sorghum	cytosol	78.45	72.25
Bra008479.1-P	Field mustard	cytosol	79.5	71.97
TraesCS3B01G299100.1	Wheat	cytosol	78.03	71.59
TraesCS3D01G265900.1	Wheat	cytosol	78.03	71.59
HORVU3Hr1G063300.1	Barley	cytosol	78.03	71.59
TraesCS3A01G265700.1	Wheat	cytosol	77.82	71.4
CDX79393	Canola	cytosol	78.87	71.27
CDY57698	Canola	cytosol	79.08	71.19
Bra003561.1-P	Field mustard	cytosol	79.08	71.19
KXG19781	Sorghum	cytosol	70.5	63.35
GSMUA_Achr4P00810_001	Banana	cytosol	79.5	62.19
Zm00001d043841_P003	Maize	cytosol	78.66	41.59
KRH08796	Soybean	cytosol	13.81	37.93
KRH58481	Soybean	cytosol	30.96	36.72
KRH42362	Soybean	cytosol, endoplasmic reticulum	30.96	36.54
KRH26619	Soybean	nucleus	32.01	35.09
KRH30451	Soybean	cytosol	31.17	34.33
KRH25197	Soybean	cytosol	30.96	34.1
KRH22691	Soybean	cytosol	28.24	33.01
KRH00594	Soybean	cytosol, plastid	30.13	29.33
KRH40573	Soybean	cytosol, plastid	29.71	29.22
KRH53570	Soybean	endoplasmic reticulum, plasma membrane	21.76	26.53
KRH08789	Soybean	cytosol	18.41	26.27
KRH64362	Soybean	endoplasmic reticulum, plasma membrane	21.34	26.02
KRH15897	Soybean	endoplasmic reticulum	21.13	25.9
KRH57680	Soybean	nucleus	32.43	23.52
KRG94255	Soybean	nucleus	32.01	23.22
KRH57222	Soybean	cytosol	27.62	21.05
KRH35220	Soybean	endoplasmic reticulum	28.03	16.56
KRG91604	Soybean	endoplasmic reticulum, plasma membrane	27.82	16.22
KRH27876	Soybean	cytosol	28.45	16.21
KRH38312	Soybean	endoplasmic reticulum	27.41	16.03
KRH08780	Soybean	extracellular, plasma membrane	27.41	16.03
KRH77598	Soybean	endoplasmic reticulum	27.82	15.85
KRH59989	Soybean	endoplasmic reticulum	27.82	15.83
KRH41256	Soybean	extracellular	27.62	15.47
KRH71559	Soybean	cytosol	29.29	12.66
KRH29161	Soybean	cytosol, mitochondrion	25.94	11.95
KRH24190	Soybean	mitochondrion	25.94	11.93
KRH31896	Soybean	nucleus	29.92	11.66
KRH54195	Soybean	plastid	29.71	11.47
KRH63756	Soybean	cytosol, plastid	29.5	11.43
KRH03951	Soybean	nucleus	29.08	11.36
KRH31895	Soybean	nucleus	29.5	11.31
KRH71560	Soybean	nucleus	29.08	11.18

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	EntrezGene:100801219	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase
EMBL:ACUP02009109	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:GLYMA_15G012200	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150
GO:GO:0008568	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0051013	UniProt:I1MCK1
InterPro:KATNA1	EnsemblPlants:KRH09800	ProteinID:KRH09800	ProteinID:KRH09800.1	HAMAP:MF_03023	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF19	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI000233B8B0	InterPro:Vps4_C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:976439..980069

Molecular Weight (calculated)

53399.2 Da

IEP (calculated)

8.106

GRAVY (calculated)

-0.611

Length

478 amino acids

Sequence
(BLAST)

001: MSGLKEHLKL AREYAVEGLY DTSVIFFDNA VAQINKHLNS NSVEDPLVRA KWMKVKKALC EETEVVKQLD AERRAFKETT RSPSQSSSFV FQPLDNYPTT
101: SPPPPPPHDP DVWRPPSPDD ARRPTRPTAR SKDGAWAARG SARPAPRAAK PNSRVSTGTG KKGKDNNKYE GPDGELAEML ERDVLETSPA VRWDDVAGLT
201: QAKSLLEEAL VLPLWMPEYF QGIRRPWKGV LMFGPPGTGK TLLAKAVATE CGTTFFNVSS ATLASKWRGE SERMVRCLFD LARAYAPSTI FIDEIDSLCN
301: ARGASGEHES SRRVKSELLV QLDGVNNSST NEDGTRKIVM VLAATNFPWD IDEALRRRLE KRIYIPLPNF ESRKELIRIN LRTVEVSPDV NIDEVARRTE
401: GYSGDDLTNV CRDASLNGMR RKIAGKTRDE IKNMSKDEIS KDPVAMCDFE AALKKVQPSV SQADIERHEK WYAEFGSA

Best Arabidopsis Sequence Match ( AT1G80350.1 )
(BLAST)

001: MVGSSNSLAG LQDHLKLARE YALEGSYDTS VIFFDGAIAQ INKHLNTLDD PLARTKWMNV KKAIMEETEV VKQLDAERRA FKEAPTGRRA ASPPINTKSS
101: FVFQPLDEYP TSSGGGPMDD PDVWRPPTRD VTSRRPARAG QTGTRKSPQD GAWARGPTTR TGPASRGGRG GATSKSTAGA RSSTAGKKGA ASKSNKAESM
201: NGDAEDGKSK RGLYEGPDED LAAMLERDVL DSTPGVRWDD VAGLSEAKRL LEEAVVLPLW MPEYFQGIRR PWKGVLMFGP PGTGKTLLAK AVATECGTTF
301: FNVSSATLAS KWRGESERMV RCLFDLARAY APSTIFIDEI DSLCNSRGGS GEHESSRRVK SELLVQVDGV SNTATNEDGS RKIVMVLAAT NFPWDIDEAL
401: RRRLEKRIYI PLPDFESRKA LININLRTVE VASDVNIEDV ARRTEGYSGD DLTNVCRDAS MNGMRRKIAG KTRDEIKNMS KDDISNDPVA MCDFEEAIRK
501: VQPSVSSSDI EKHEKWLSEF GSA

Arabidopsis Description

AAA1Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.