CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40573	Soybean	cytosol, plastid	94.91	95.88
Bra004917.1-P	Field mustard	cytosol	48.07	73.98
VIT_15s0048g01720.t01	Wine grape	cytosol	73.93	73.93
CDY18925	Canola	plastid	54.18	73.48
CDX74745	Canola	cytosol	70.88	73.26
AT2G45500.5	Thale cress	cytosol	72.3	71.43
Bra039332.1-P	Field mustard	cytosol	62.73	70.48
Solyc01g094150.2.1	Tomato	nucleus	69.86	69.86
TraesCS7D01G060200.1	Wheat	cytosol	66.6	68.55
TraesCS4A01G422400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.8	68.33
TraesCS7A01G065800.1	Wheat	cytosol	66.19	67.71
Os06t0130000-02	Rice	cytosol	67.01	67.56
EER87773	Sorghum	cytosol	67.41	67.55
CDY37046	Canola	cytosol	69.86	67.12
Zm00001d045483_P002	Maize	cytosol	67.01	66.06
GSMUA_Achr10P...	Banana	cytosol	65.58	61.92
HORVU7Hr1G013190.8	Barley	plastid	65.99	57.96
CDY27380	Canola	nucleus	70.88	46.9
KRH23518	Soybean	cytosol	19.96	42.79
KRH08796	Soybean	cytosol	13.44	37.93
KRH58481	Soybean	cytosol	29.94	36.48
KRH42362	Soybean	cytosol, endoplasmic reticulum	29.94	36.3
KRH25197	Soybean	cytosol	30.55	34.56
KRH30451	Soybean	cytosol	30.55	34.56
KRH26619	Soybean	nucleus	30.35	34.17
KRH22691	Soybean	cytosol	27.09	32.52
KRH64362	Soybean	endoplasmic reticulum, plasma membrane	24.85	31.12
KRH53570	Soybean	endoplasmic reticulum, plasma membrane	24.85	31.12
KRH15897	Soybean	endoplasmic reticulum	24.64	31.03
KRH09800	Soybean	cytosol	29.33	30.13
KRH47511	Soybean	cytosol	29.74	27.5
KRH44395	Soybean	cytosol	29.53	27.2
KRG94255	Soybean	nucleus	36.05	26.86
KRH57680	Soybean	nucleus	35.85	26.71
KRH08789	Soybean	cytosol	17.92	26.27
KRH57222	Soybean	cytosol	26.48	20.73
KRH35220	Soybean	endoplasmic reticulum	28.72	17.43
KRH38312	Soybean	endoplasmic reticulum	28.92	17.38
KRH08780	Soybean	extracellular, plasma membrane	28.92	17.38
KRG91604	Soybean	endoplasmic reticulum, plasma membrane	28.72	17.2
KRH77598	Soybean	endoplasmic reticulum	28.51	16.69
KRH59989	Soybean	endoplasmic reticulum	28.11	16.43
KRH41256	Soybean	extracellular	28.51	16.41
KRH27876	Soybean	cytosol	27.9	16.33
KRH29161	Soybean	cytosol, mitochondrion	28.72	13.58
KRH24190	Soybean	mitochondrion	28.72	13.57
KRH71559	Soybean	cytosol	28.31	12.57
KRH54195	Soybean	plastid	29.33	11.63
KRH63756	Soybean	cytosol, plastid	29.12	11.59
KRH03951	Soybean	nucleus	28.72	11.52
KRH31896	Soybean	nucleus	28.31	11.34
KRH31895	Soybean	nucleus	28.72	11.31
KRH71560	Soybean	nucleus	28.51	11.26

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100780946	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase	EMBL:ACUP02011455
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:GLYMA_18G222400	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0016787	GO:GO:0016887	UniProt:I1N3G3	EnsemblPlants:KRH00594	ProteinID:KRH00594	ProteinID:KRH00594.1
InterPro:MIT	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074
PANTHER:PTHR23074:SF86	SMART:SM00382	SMART:SM00745	SUPFAM:SSF52540	UniParc:UPI000233E126	InterPro:Vps4_C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:50933902..50941233

Molecular Weight (calculated)

54583.1 Da

IEP (calculated)

9.858

GRAVY (calculated)

-0.452

Length

491 amino acids

Sequence
(BLAST)

001: MSFLQGIVDS FNSIFIPDNN NYHDTNSPSS SSSSTNRMEA SPPPPPLPPS VSNERVAYKL KGYFDLATQE IAKGVRAEEW GLIDDALLHY RNAHSILLEA
101: NSTPVPSYIT SSEQQKVQSY REKISKWQSQ VSERLQTLAR RAGSSSANQS TSKLAQTVAV PIKPSSTRKN VLQKPPQRTG QVNKVGSPKS SQGSGVNYDD
201: KLVEMINTAI VDRSPSVRWE DVAGLEKAKQ ALMEMVILPT KRRDLFTGLR RPARGLLLFG PPGNGKTMLA KAVASESQAT FFNVTAASLT SKWVGEGEKL
301: VRTLFMVAIS RQPSVIFIDE IDSIMSTRLA NENDASRRLK SEFLIQFDGV TSNPDDIVIV IGATNKPQEL DDAVLRRLVK RIYIPLPDEN VRKLLLKHKL
401: KGQAFSLPSR DLERLVKETE GYSGSDLQAL CEEAAMMPIR ELGADILTVK ANQVRGLRYE DFKKAMATIR PSLNKSKWEE LERWNEDFGS N

Best Arabidopsis Sequence Match ( AT2G45500.1 )
(BLAST)

001: MSFLRGIIDS FSSILNEESK KDPSVSSSST SSESMNGIDG VPVTNERIAY KLKGYFDLAK EEIAKGVRAE EWGLHDDALL HYRNAQRIMN EATSTPSPSY
101: ISSSEKEKVR SYREKISNWQ NQVSERLQAL GKRTGVGMSE NKRTVAYPSS ASVSSTASRY RKTLSQKTPV ARGGVATPRN PKDAAASPKP VKESGNVYDD
201: KLVEMINTTI VDRSPSVKWD DVAGLNGAKQ ALLEMVILPA KRRDLFTGLR RPARGLLLFG PPGNGKTMLA KAVASESQAT FFNVSASSLT SKWVGEAEKL
301: VKTLFQVAIS RQPSVIFMDE IDSIMSTRST SENEASRRLK SEFLIQFDGV TSNPDDLVII IGATNKPQEL DDAVLRRLVK RIYVPLPDSN VRKLLFKTKL
401: KCQPHSLSDG DIDKIVKETE GYSGSDLQAL CEEAAMMPIR ELGANILTIQ ANKVRSLRYD DFRKSMAVIR PSLSKSKWEE LERWNSEFGS N

Arabidopsis Description

AAA-type ATPase family protein [Source:TAIR;Acc:AT2G45500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.