Factsheet for GSMUA_Achr10P07490_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0130000-02	Rice	cytosol	68.27	72.9
TraesCS7A01G065800.1	Wheat	cytosol	67.12	72.71
TraesCS4A01G422400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.92	72.5
TraesCS7D01G060200.1	Wheat	cytosol	66.35	72.33
EER87773	Sorghum	cytosol	67.5	71.63
Zm00001d045483_P002	Maize	cytosol	67.12	70.08
CDY18925	Canola	plastid	47.88	68.78
Bra004917.1-P	Field mustard	cytosol	41.15	67.08
KRH00594	Soybean	cytosol, plastid	61.92	65.58
KRH40573	Soybean	cytosol, plastid	61.15	65.43
CDX74745	Canola	cytosol	59.42	65.05
VIT_15s0048g01720.t01	Wine grape	cytosol	61.15	64.77
Solyc01g094150.2.1	Tomato	nucleus	59.23	62.73
AT2G45500.5	Thale cress	cytosol	59.62	62.37
Bra039332.1-P	Field mustard	cytosol	51.73	61.56
HORVU7Hr1G013190.8	Barley	plastid	66.15	61.54
CDY37046	Canola	cytosol	58.27	59.3
CDY27380	Canola	nucleus	58.46	40.97
GSMUA_Achr4P24320_001	Banana	cytosol	28.46	36.27
GSMUA_Achr2P22550_001	Banana	cytosol	28.46	35.92
GSMUA_Achr6P09890_001	Banana	cytosol	20.96	35.86
GSMUA_Achr10P...	Banana	cytosol	26.54	35.66
GSMUA_Achr3P01430_001	Banana	cytosol	27.88	35.28
GSMUA_Achr7P25300_001	Banana	cytosol	27.12	34.64
GSMUA_Achr11P...	Banana	cytosol	20.77	34.07
GSMUA_Achr11P...	Banana	cytosol	20.19	33.23
GSMUA_Achr4P05220_001	Banana	endoplasmic reticulum	22.69	30.41
GSMUA_Achr11P...	Banana	endoplasmic reticulum	22.12	29.64
GSMUA_Achr6P27610_001	Banana	cytosol	33.46	26.56
GSMUA_Achr4P00810_001	Banana	cytosol	28.46	24.22
GSMUA_Achr9P05420_001	Banana	cytosol, mitochondrion	25.19	20.09
GSMUA_Achr11P...	Banana	cytosol	26.54	19.57
GSMUA_Achr7P14270_001	Banana	cytosol	25.77	18.95
GSMUA_Achr11P...	Banana	cytosol	28.08	16.24
GSMUA_Achr8P33760_001	Banana	cytosol	29.81	14.04
GSMUA_Achr7P07310_001	Banana	mitochondrion	28.27	14.01
GSMUA_Achr8P10090_001	Banana	cytosol	28.27	13.52
GSMUA_Achr3P00740_001	Banana	mitochondrion	29.81	13.51

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:50.3.6	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr10G07490_001	EnsemblPlants:GSMUA_Achr10P07490_001
EnsemblPlants:GSMUA_Achr10T07490_001	UniProt:M0RG75	InterPro:MIT	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23074	PANTHER:PTHR23074:SF86	SMART:SM00382	SMART:SM00745	SUPFAM:SSF52540	UniParc:UPI000294E35A
SEG:seg	:	:	:	:	:

Description

Putative Spastin [Source:GMGC_GENE;Acc:GSMUA_Achr10G07490_001]

Coordinates

chr10:-:17699559..17708018

Molecular Weight (calculated)

58146.8 Da

IEP (calculated)

10.011

GRAVY (calculated)

-0.393

Length

520 amino acids

Sequence
(BLAST)

001: MSLLKDIVNS FSEFFARGPA ASDRSPPPAP DRMEPSPSTA PAVVGERVAL KLKGYFDLAK EEIDKAVRAE EWGLTEDAVA HYRNAQRVML EAKAARVPDA
101: LASRDKGQVK TYQQKISTWQ EQVAERLRVL TQRTGKILLR KQVIMMSQLL NYANSNWKFH SILGAYCNVD STSPSYATSR PISTTVPTAQ KVTKNLPSFN
201: SSHQMIGNKK NSISNSRPGQ ESIKNYDDRL VEMINTAIVD RSPAVKWDDV AGLDKAKQTL MEMVILPTKR RDLFTGLRKP ARGLLLFGPP GNGKTMLAKA
301: VASESEATFF NVSASSLTSK WVGEAEKLVR TLFEVAVARQ PSVIFMDEID SVLSARVANE NDASRRLKSE FLVQFDGVTS KQNDFVIVIG ATNKPQELDD
401: AVLRRLVKRI YIPLPDENVR KLLLRNQLKG RAYSLPSGDL ERLANITDGY SGSDLQALCE EAAMMPIREL GPQHILTIKA SQVRPLRYED FQKAMVVIRP
501: SLRKSKWEEL ERWNEEFGSS

Best Arabidopsis Sequence Match ( AT2G45500.1 )
(BLAST)

001: MSFLRGIIDS FSSILNEESK KDPSVSSSST SSESMNGIDG VPVTNERIAY KLKGYFDLAK EEIAKGVRAE EWGLHDDALL HYRNAQRIMN EATSTPSPSY
101: ISSSEKEKVR SYREKISNWQ NQVSERLQAL GKRTGVGMSE NKRTVAYPSS ASVSSTASRY RKTLSQKTPV ARGGVATPRN PKDAAASPKP VKESGNVYDD
201: KLVEMINTTI VDRSPSVKWD DVAGLNGAKQ ALLEMVILPA KRRDLFTGLR RPARGLLLFG PPGNGKTMLA KAVASESQAT FFNVSASSLT SKWVGEAEKL
301: VKTLFQVAIS RQPSVIFMDE IDSIMSTRST SENEASRRLK SEFLIQFDGV TSNPDDLVII IGATNKPQEL DDAVLRRLVK RIYVPLPDSN VRKLLFKTKL
401: KCQPHSLSDG DIDKIVKETE GYSGSDLQAL CEEAAMMPIR ELGANILTIQ ANKVRSLRYD DFRKSMAVIR PSLSKSKWEE LERWNSEFGS N

Arabidopsis Description

AAA-type ATPase family protein [Source:TAIR;Acc:AT2G45500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.