Factsheet for GSMUA_Achr6P09890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22550_001	Banana	cytosol	70.07	51.7
GSMUA_Achr3P01430_001	Banana	cytosol	69.41	51.34
GSMUA_Achr4P24320_001	Banana	cytosol	68.42	50.98
GSMUA_Achr10P...	Banana	cytosol	33.55	26.36
GSMUA_Achr7P25300_001	Banana	cytosol	34.21	25.55
GSMUA_Achr11P...	Banana	endoplasmic reticulum	27.63	21.65
GSMUA_Achr4P05220_001	Banana	endoplasmic reticulum	27.3	21.39
GSMUA_Achr10P...	Banana	cytosol	35.86	20.96
GSMUA_Achr11P...	Banana	cytosol	20.72	19.87
GSMUA_Achr11P...	Banana	cytosol	20.39	19.62
GSMUA_Achr4P00810_001	Banana	cytosol	35.86	17.84
GSMUA_Achr6P27610_001	Banana	cytosol	33.88	15.73
GSMUA_Achr9P05420_001	Banana	cytosol, mitochondrion	28.29	13.19
GSMUA_Achr7P14270_001	Banana	cytosol	28.95	12.45
GSMUA_Achr11P...	Banana	cytosol	28.29	12.2
GSMUA_Achr11P...	Banana	cytosol	29.28	9.9
GSMUA_Achr7P07310_001	Banana	mitochondrion	32.24	9.34
GSMUA_Achr8P33760_001	Banana	cytosol	30.59	8.42
GSMUA_Achr8P10090_001	Banana	cytosol	29.28	8.19
GSMUA_Achr3P00740_001	Banana	mitochondrion	30.26	8.02

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr6G09890_001	EnsemblPlants:GSMUA_Achr6P09890_001
EnsemblPlants:GSMUA_Achr6T09890_001	UniProt:M0T5N8	InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF04212	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SUPFAM:SSF116846	SUPFAM:SSF52540
UniParc:UPI000295D66A	SEG:seg	:	:	:	:

Description

Putative Vacuolar protein sorting-associated protein 4A [Source:GMGC_GENE;Acc:GSMUA_Achr6G09890_001]

Coordinates

chr6:+:6633499..6637070

Molecular Weight (calculated)

33726.0 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.462

Length

304 amino acids

Sequence
(BLAST)

001: MDSNFKEQAI EYVKQAVLED NAENYVKAFP LYMNALEYFR TTSSTRRTPR SRRPSPRSSP SISAALRTSA PCSTAAAPDP PPTGTRPCPS VKWNDVAGLE
101: SAKQALQEAV ILPVKFPQFF TGKRRPWRAF LLSGPPGTGK SYLAKAVATE AGSTIFSISS SDLVSKWMGE SEKLVSNLFE MARENAPSII FIDEIDSLCG
201: QRGEGNEIEA SRRIKTELPC ADAGCRKQRS ESPHSCRHKC TLCSGLDTFI TQAILQRFDK WIYIPLPDLK GRQHMFKVHL GDTSHNLSES DFVNLARRTE
301: GFPS

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.