Factsheet for GSMUA_Achr4P24320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P03160_001
GSMUA_Achr3P10980_001
GSMUA_Achr4P29310_001
GSMUA_Achr5P10670_001
GSMUA_Achr6P31600_001
GSMUA_Achr7P16440_001
GSMUA_Achr9P10010_001
GSMUA_Achr9P12660_001
GSMUA_Achr9P19810_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	GSMUA_Achr1P03160_001	AT3G54840.1	17468262
AT2G27600.1	GSMUA_Achr4P29310_001	AT3G54840.1	17468262
AT2G27600.1	GSMUA_Achr5P10670_001	AT3G54840.1	17468262
AT2G27600.1	GSMUA_Achr6P31600_001	AT4G19640.1	17468262
AT2G27600.1	GSMUA_Achr7P16440_001	AT4G19640.1	17468262
AT2G27600.1	GSMUA_Achr9P10010_001	AT4G19640.1	17468262
AT2G27600.1	GSMUA_Achr3P10980_001	AT4G26750.1	17468262
AT2G27600.1	GSMUA_Achr9P12660_001	AT4G26750.1	17468262
AT2G27600.1	GSMUA_Achr9P19810_001	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0141100-02	Rice	cytosol, plasma membrane	68.87	92.74
GSMUA_Achr3P01430_001	Banana	cytosol	91.67	91.0
GSMUA_Achr2P22550_001	Banana	cytosol	91.67	90.78
KRH26619	Soybean	nucleus	92.89	86.93
KRH22691	Soybean	cytosol	86.52	86.31
EES00346	Sorghum	cytosol	91.91	86.01
Zm00001d039904_P006	Maize	cytosol	91.42	85.75
VIT_06s0080g00160.t01	Wine grape	extracellular	90.44	85.22
CDX93578	Canola	cytosol	89.46	84.88
KRH30451	Soybean	cytosol	90.2	84.79
KRH25197	Soybean	cytosol	90.2	84.79
VIT_13s0106g00490.t01	Wine grape	cytosol	90.2	84.79
Bra018640.1-P	Field mustard	cytosol	89.22	84.65
CDX95077	Canola	cytosol	89.22	84.45
CDX83275	Canola	cytosol	88.97	83.83
CDX71438	Canola	cytosol	87.99	83.68
Bra000503.1-P	Field mustard	cytosol	88.73	83.6
TraesCS3D01G053600.1	Wheat	cytosol	89.71	83.56
CDY31186	Canola	cytosol	88.73	83.41
TraesCS3B01G065200.1	Wheat	cytosol	89.46	83.33
TraesCS3A01G054100.1	Wheat	cytosol	89.46	83.33
CDY04504	Canola	cytosol	87.99	83.1
AT2G27600.1	Thale cress	cytosol	88.48	82.99
Bra012009.1-P	Field mustard	cytosol	87.99	82.91
Zm00001d008596_P005	Maize	cytosol	91.18	81.76
PGSC0003DMT400050194	Potato	cytosol	86.76	81.38
Solyc11g007170.1.1	Tomato	cytosol	80.39	81.19
Os02t0159900-01	Rice	plasma membrane	77.7	73.21
TraesCS6A01G133300.1	Wheat	cytosol	77.21	71.92
TraesCS6D01G122900.1	Wheat	cytosol	76.96	71.85
TraesCS6B01G161700.1	Wheat	cytosol	76.96	71.85
GSMUA_Achr6P09890_001	Banana	cytosol	50.98	68.42
Os01t0141300-00	Rice	cytosol	77.45	66.11
HORVU3Hr1G010300.1	Barley	cytosol, plastid	76.23	59.35
GSMUA_Achr10P...	Banana	cytosol	34.07	35.92
GSMUA_Achr7P25300_001	Banana	cytosol	35.29	35.38
GSMUA_Achr4P05220_001	Banana	endoplasmic reticulum	27.21	28.61
GSMUA_Achr10P...	Banana	cytosol	36.27	28.46
GSMUA_Achr11P...	Banana	cytosol	22.06	28.39
GSMUA_Achr11P...	Banana	endoplasmic reticulum	26.72	28.09
GSMUA_Achr11P...	Banana	cytosol	20.59	26.58
GSMUA_Achr4P00810_001	Banana	cytosol	37.75	25.2
GSMUA_Achr6P27610_001	Banana	cytosol	35.54	22.14
GSMUA_Achr9P05420_001	Banana	cytosol, mitochondrion	27.7	17.33
GSMUA_Achr7P14270_001	Banana	cytosol	27.94	16.12
GSMUA_Achr11P...	Banana	cytosol	27.7	16.03
GSMUA_Achr11P...	Banana	cytosol	29.41	13.35
GSMUA_Achr7P07310_001	Banana	mitochondrion	29.9	11.63
GSMUA_Achr8P33760_001	Banana	cytosol	29.9	11.05
GSMUA_Achr3P00740_001	Banana	mitochondrion	30.15	10.72
GSMUA_Achr8P10090_001	Banana	cytosol	28.43	10.67

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr4G24320_001
EnsemblPlants:GSMUA_Achr4P24320_001	EnsemblPlants:GSMUA_Achr4T24320_001	UniProt:M0SRP3	InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF04212	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137
SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540	UniParc:UPI000294E169	InterPro:Vps4_C

Description

Vacuolar protein sorting-associated protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G24320_001]

Coordinates

chr4:-:24164358..24171557

Molecular Weight (calculated)

46035.0 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.523

Length

408 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVRQAVQED NAGNYVKAFP LYMNALEYFR THLKYEKNPK IKEAITQKFT EYLRRAEEIR APKDDSGGDG GEDQAKLRAG LNSAIIREKP
101: NVKWNDVAGL ESAKQALQEA VILPVKFPQF FTGKRRPWRA FLLYGPPGTG KSYLAKAVAT EADSTFFSIS SSDLVSKWMG ESEKLVANLF QMARENAPSI
201: IFIDEIDSLC GQRGEGNESE ASRRIKTELL VQMQGVGNND EKVLVLAATN TPYALDQAIR RRFDKRIYIP LPDLKARQHM FKVHLGDTPH NLTEKDFEYL
301: ARRTEGFSGS DISVCVKDVL FEPVRKAQDA MFFCKTSDGM WMPCGPKQPG AVQTTLQELA AKGLGTKILP PPITRNDFEK VLARQRPTVS KADLEVHERF
401: TKEFGEEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.