Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000503.1-P | Field mustard | cytosol | 99.77 | 99.77 |
| CDY31186 | Canola | cytosol | 98.61 | 98.39 |
| CDY04504 | Canola | cytosol | 97.46 | 97.69 |
| CDX71438 | Canola | cytosol | 96.54 | 97.44 |
| AT2G27600.1 | Thale cress | cytosol | 96.54 | 96.09 |
| CDX93578 | Canola | cytosol | 93.3 | 93.95 |
| CDX95077 | Canola | cytosol | 92.84 | 93.27 |
| KRH26619 | Soybean | nucleus | 90.53 | 89.91 |
| KRH22691 | Soybean | cytosol | 84.76 | 89.73 |
| KRH30451 | Soybean | cytosol | 89.61 | 89.4 |
| KRH25197 | Soybean | cytosol | 89.61 | 89.4 |
| GSMUA_Achr4P24320_001 | Banana | cytosol | 83.83 | 88.97 |
| VIT_06s0080g00160.t01 | Wine grape | extracellular | 88.91 | 88.91 |
| Os01t0141100-02 | Rice | cytosol, plasma membrane | 62.12 | 88.78 |
| Zm00001d039904_P006 | Maize | cytosol | 88.91 | 88.51 |
| GSMUA_Achr2P22550_001 | Banana | cytosol | 83.83 | 88.11 |
| EES00346 | Sorghum | cytosol | 88.68 | 88.07 |
| TraesCS3A01G054100.1 | Wheat | cytosol | 88.45 | 87.44 |
| TraesCS3B01G065200.1 | Wheat | cytosol | 88.22 | 87.21 |
| TraesCS3D01G053600.1 | Wheat | cytosol | 87.99 | 86.99 |
| PGSC0003DMT400050194 | Potato | cytosol | 87.07 | 86.67 |
| Solyc11g007170.1.1 | Tomato | cytosol | 80.83 | 86.63 |
| GSMUA_Achr3P01430_001 | Banana | cytosol | 81.99 | 86.37 |
| Zm00001d008596_P005 | Maize | cytosol | 88.68 | 84.4 |
| TraesCS6D01G122900.1 | Wheat | cytosol | 73.9 | 73.23 |
| TraesCS6A01G133300.1 | Wheat | cytosol | 73.9 | 73.06 |
| TraesCS6B01G161700.1 | Wheat | cytosol | 73.44 | 72.77 |
| Os02t0159900-01 | Rice | plasma membrane | 71.82 | 71.82 |
| Os01t0141300-00 | Rice | cytosol | 72.75 | 65.9 |
| HORVU3Hr1G010300.1 | Barley | cytosol, plastid | 74.6 | 61.64 |
| CDY18925 | Canola | plastid | 32.79 | 39.23 |
| CDX84641 | Canola | cytosol | 32.1 | 37.07 |
| CDX79566 | Canola | cytosol | 32.1 | 36.97 |
| CDY17260 | Canola | cytosol | 32.56 | 36.81 |
| CDX84306 | Canola | cytosol | 32.33 | 36.27 |
| CDX74745 | Canola | cytosol | 35.8 | 32.63 |
| CDY37590 | Canola | cytosol | 35.1 | 29.75 |
| CDY37046 | Canola | cytosol | 34.87 | 29.55 |
| CDY38662 | Canola | cytosol | 35.1 | 29.46 |
| CDX79393 | Canola | cytosol | 35.57 | 29.11 |
| CDY57698 | Canola | cytosol | 35.57 | 29.0 |
| CDY38752 | Canola | endoplasmic reticulum | 25.4 | 28.5 |
| CDY47077 | Canola | endoplasmic reticulum, plasma membrane | 24.71 | 27.51 |
| CDY14372 | Canola | endoplasmic reticulum | 25.17 | 27.46 |
| CDY19035 | Canola | endoplasmic reticulum | 24.71 | 27.3 |
| CDY20251 | Canola | endoplasmic reticulum | 25.17 | 27.11 |
| CDY71574 | Canola | endoplasmic reticulum, plasma membrane | 24.48 | 27.04 |
| CDX92836 | Canola | endoplasmic reticulum, plasma membrane | 24.25 | 26.85 |
| CDY29857 | Canola | endoplasmic reticulum, plasma membrane | 24.25 | 26.85 |
| CDY55344 | Canola | endoplasmic reticulum | 24.25 | 26.79 |
| CDY30236 | Canola | endoplasmic reticulum | 24.25 | 26.79 |
| CDY24618 | Canola | endoplasmic reticulum | 16.63 | 25.62 |
| CDY28494 | Canola | plastid | 32.1 | 21.45 |
| CDY34176 | Canola | plastid | 32.1 | 21.45 |
| CDX92656 | Canola | cytosol | 21.02 | 21.11 |
| CDY27380 | Canola | nucleus | 35.33 | 20.62 |
| CDX96166 | Canola | cytosol | 26.33 | 16.79 |
| CDY19639 | Canola | extracellular, vacuole | 29.1 | 15.69 |
| CDY49165 | Canola | extracellular, plasma membrane | 28.18 | 15.62 |
| CDY56163 | Canola | extracellular, vacuole | 28.64 | 15.4 |
| CDY51824 | Canola | extracellular, plasma membrane | 28.64 | 15.38 |
| CDY08360 | Canola | endoplasmic reticulum | 29.33 | 15.28 |
| CDY38192 | Canola | plasma membrane | 29.1 | 15.16 |
| CDY33415 | Canola | cytosol, mitochondrion | 30.48 | 12.99 |
| CDY03591 | Canola | cytosol, mitochondrion, plastid | 29.79 | 12.91 |
| CDY45052 | Canola | mitochondrion | 29.56 | 12.81 |
| CDY42204 | Canola | cytosol, mitochondrion, plastid | 30.02 | 12.49 |
| CDX91317 | Canola | plastid | 27.94 | 11.44 |
| CDX89214 | Canola | extracellular, plasma membrane | 19.86 | 11.35 |
| CDY32485 | Canola | plastid | 27.94 | 10.98 |
| CDX90936 | Canola | plastid | 27.71 | 10.97 |
| CDX97266 | Canola | plastid | 27.71 | 10.61 |
| CDX89933 | Canola | plastid | 27.71 | 10.38 |
| CDY19014 | Canola | endoplasmic reticulum, extracellular | 16.86 | 10.17 |
| CDY18018 | Canola | plastid | 28.41 | 10.08 |
| CDY18129 | Canola | cytosol, plastid | 28.18 | 10.05 |
| CDY50381 | Canola | plastid | 27.48 | 9.91 |
| CDY29873 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.7 | 9.7 |
| CDY22053 | Canola | plastid | 27.48 | 9.68 |
| CDX92857 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.7 | 9.66 |
| CDX89934 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:1.20.58.280 | MapMan:22.5.4.4.1 | Gene3D:3.40.50.300 | GO:A0A078D2C3 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EnsemblPlants:CDX83275 | ProteinID:CDX83275 | ProteinID:CDX83275.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00138826001 | InterPro:MIT | InterPro:MIT_dom_sf |
| InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF04212 | PFAM:PF09336 | ScanProsite:PS00674 | PANTHER:PTHR23074 |
| PANTHER:PTHR23074:SF137 | SMART:SM00382 | SMART:SM00745 | SUPFAM:SSF116846 | SUPFAM:SSF52540 | UniParc:UPI0004EEDC67 |
| InterPro:Vps4_C | SEG:seg | : | : | : | : |
Description
BnaA03g22310D
Coordinates
chrLK031832:+:769139..771710
Molecular Weight (calculated)
48265.2 Da
IEP (calculated)
6.807
GRAVY (calculated)
-0.544
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSNFKEQAI EYVKQAVQED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GPNGDAAVAT RPKSKPKDGG
101: GEGGEDAEQS KLRAGLNSAI VREKPNIKWT DVAGLESAKQ ALQEAVILPV KFPQFFTGKR RPWRAFLLYG PPGTGKSYLA KAVATEADST FFSVSSSDLV
201: SKWMGESEKL VSNLFEMARE SSPSIIFVDE IDSLCGQRGE GNESEASRRI KTELLVQMQG VGHSDDKVLV LAATNTPYAL DQAIRRRFDK RIYIPLPEAK
301: ARQHMFKVHL GDTPHNLTES DFEYLGLKTE GFSGSDVSVC VKDVLFEPVR KTQDAMFFFK SPDGTWMPCG PRQPGAIQTT MQDLAAKGLA EKIIPPPITR
401: TDFEKVLARQ RPTVSKSDLD VHERFTQEFG EEG
101: GEGGEDAEQS KLRAGLNSAI VREKPNIKWT DVAGLESAKQ ALQEAVILPV KFPQFFTGKR RPWRAFLLYG PPGTGKSYLA KAVATEADST FFSVSSSDLV
201: SKWMGESEKL VSNLFEMARE SSPSIIFVDE IDSLCGQRGE GNESEASRRI KTELLVQMQG VGHSDDKVLV LAATNTPYAL DQAIRRRFDK RIYIPLPEAK
301: ARQHMFKVHL GDTPHNLTES DFEYLGLKTE GFSGSDVSVC VKDVLFEPVR KTQDAMFFFK SPDGTWMPCG PRQPGAIQTT MQDLAAKGLA EKIIPPPITR
401: TDFEKVLARQ RPTVSKSDLD VHERFTQEFG EEG
001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG
Arabidopsis Description
SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.