CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71438
CDX83275
CDX86029
CDX99153
CDY04504
CDY31186

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26750.1	CDX71438	AT2G27600.1	17468262
AT4G26750.1	CDX83275	AT2G27600.1	17468262
AT4G26750.1	CDY04504	AT2G27600.1	17468262
AT4G26750.1	CDY31186	AT2G27600.1	17468262
AT4G26750.1	CDX86029	AT3G45640.1	21798944
AT4G26750.1	CDX99153	AT3G45640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026406.1-P	Field mustard	cytosol	98.09	98.09
CDX94288	Canola	cytosol	95.94	95.94
AT4G26750.1	Thale cress	cytosol	87.59	87.17
PGSC0003DMT400057424	Potato	nucleus	60.14	60.43
Solyc07g064980.2.1	Tomato	nucleus	59.67	60.1
VIT_19s0090g01240.t01	Wine grape	nucleus	60.62	59.62
GSMUA_Achr3P10980_001	Banana	nucleus	53.22	53.61
KRH73817	Soybean	nucleus	58.0	52.03
GSMUA_Achr9P12660_001	Banana	nucleus	50.6	51.21
KRH14310	Soybean	cytosol	58.95	50.72
GSMUA_Achr9P19810_001	Banana	cytosol	53.46	49.12
EER88310	Sorghum	nucleus	53.94	47.68
TraesCS7B01G190400.1	Wheat	cytosol	55.37	47.64
TraesCS7D01G225200.1	Wheat	cytosol	55.13	47.43
HORVU7Hr1G045860.5	Barley	cytosol	54.18	46.42
TraesCS7A01G223600.1	Wheat	cytosol	53.94	46.41
Zm00001d037417_P002	Maize	nucleus	53.22	46.17
Os06t0308800-01	Rice	nucleus	53.7	46.11
Zm00001d045870_P001	Maize	nucleus	53.94	40.0
Zm00001d037415_P002	Maize	cytosol	24.34	35.17

Protein Annotations

EnsemblPlants:CDX89306	EnsemblPlantsGene:GSBRNA2T00149521001	Gene3D:1.20.5.420	Gene3D:1.25.40.270	InterPro:IPR023175	InterPro:VPS_Vta1/CALS_N
PANTHER:PTHR12741	PANTHER:PTHR12741:SF4	PFAM:PF04652	ProteinID:CDX89306	ProteinID:CDX89306.1	SEG:seg
UniParc:UPI0004EE4AEE	MapMan:22.5.4.4.2	:	:	:	:

Description

BnaA01g15870D

Coordinates

chrLK031858:+:798840..801572

Molecular Weight (calculated)

46045.9 Da

IEP (calculated)

6.277

GRAVY (calculated)

-0.905

Length

419 amino acids

Sequence
(BLAST)

001: MSNTNEPAKT LLPYLQRADE LQKHEPLVAY YCRLYAMEKG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALNVFAK ADKQDRAGRA
101: DLGTAKTFYA ANIFFEILSQ FGPVPPDIEQ KQKYAAWKAA DIRKAIKEGR KPTPGDPVDD ETDLPIPSSG PSGSYDLGAS DTNVPSQHRT EPGPSHDSND
201: DSSHHHFPEV PQHHLPPPRF HDNPNNNYPT DVSPPPPSSY PSNDLLPPPT GPSDSPYPHL YNHQSYHQDP PQHMPPPPQN YPSHEPSPNS LPNFQSYPSF
301: SESSLPATPS HFPSHYQNPE PYYSSPHSAP APSSSSFASA PPPSPYSSSN GRVNVPPALD PPAQKYHYDS SYQPGPEKIA EAHKAARFAV GALAFDEIST
401: AVEHLKKSLE LLTNPSAGH

Best Arabidopsis Sequence Match ( AT4G26750.1 )
(BLAST)

001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H

Arabidopsis Description

LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.