Factsheet for Os06t0308800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0141100-02
Os01t0141300-00
Os02t0159900-01
Os03t0285800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26750.1	Os01t0141100-02	AT2G27600.1	17468262
AT4G26750.1	Os01t0141300-00	AT2G27600.1	17468262
AT4G26750.1	Os02t0159900-01	AT2G27600.1	17468262
AT4G26750.1	Os03t0285800-01	AT3G45640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G190400.1	Wheat	cytosol	82.99	83.16
TraesCS7D01G225200.1	Wheat	cytosol	81.97	82.14
EER88310	Sorghum	nucleus	79.3	81.65
HORVU7Hr1G045860.5	Barley	cytosol	81.35	81.19
TraesCS7A01G223600.1	Wheat	cytosol	80.94	81.11
Zm00001d037417_P002	Maize	nucleus	77.66	78.47
Zm00001d045870_P001	Maize	nucleus	78.89	68.14
GSMUA_Achr3P10980_001	Banana	nucleus	50.61	59.38
Solyc07g064980.2.1	Tomato	nucleus	49.59	58.17
GSMUA_Achr9P12660_001	Banana	nucleus	48.77	57.49
PGSC0003DMT400057424	Potato	nucleus	48.36	56.59
VIT_19s0090g01240.t01	Wine grape	nucleus	49.39	56.57
Zm00001d037415_P002	Maize	cytosol	33.2	55.86
GSMUA_Achr9P19810_001	Banana	cytosol	51.23	54.82
CDX94288	Canola	cytosol	46.31	53.94
CDX89306	Canola	cytosol	46.11	53.7
Bra026406.1-P	Field mustard	cytosol	45.7	53.22
AT4G26750.1	Thale cress	cytosol	44.67	51.78
KRH73817	Soybean	nucleus	46.31	48.39
KRH14310	Soybean	cytosol	47.13	47.23

Protein Annotations

Gene3D:1.20.5.420	Gene3D:1.25.40.270	MapMan:22.5.4.4.2	EntrezGene:4340850	EMBL:AK066935	ProteinID:BAD62197.1
ProteinID:BAD62317.1	ProteinID:BAF19390.1	ProteinID:BAS97425.1	ProteinID:EAZ36769.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005768	GO:GO:0005771	GO:GO:0006810	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791	GO:GO:0009814	GO:GO:0016192
GO:GO:0042803	GO:GO:0080001	GO:GO:1900426	GO:GO:1903335	InterPro:IPR023175	EnsemblPlantsGene:Os06g0308800
EnsemblPlants:Os06t0308800-01	PFAM:PF04652	PANTHER:PTHR12741	PANTHER:PTHR12741:SF4	UniProt:Q5Z4L5	UniParc:UPI0000450798
InterPro:VPS_Vta1/CALS_N	RefSeq:XP_015644354.1	SEG:seg	:	:	:

Description

Protein of unknown function DUF605 family protein. (Os06t0308800-01)

Coordinates

chr6:+:11712594..11717062

Molecular Weight (calculated)

53830.1 Da

IEP (calculated)

6.227

GRAVY (calculated)

-0.944

Length

488 amino acids

Sequence
(BLAST)

001: MGSDAEPAKG LLPYLQRADE LQKHEPLVAY YCRLYAMEKG MRIPQKERTK TTNSLLISLM NQLEKDKKSL TLGSDDHLHV EGFALNVFAK ADKQDRAGRA
101: DINTAKTFYA ASIFFEILNQ FGELQTDVEQ KQKYAIWKAA EIRKALKEGR RPEAGPPGGD KDEAPDSTTT NSHLTDMGRS QSFGSGQHGN EASSQHVDQD
201: FSRRDSFSAV QPGNNALRHS TEKFNDHVSA QSPYSPPPPQ SQTPPQSQFS SPAQSSYSSP SYQGTDYPSS DVHKPPHGYS SAPYTSTDYP TNEVHKPPSN
301: YSSPPYTRTD YPSSDSYNPQ SNDKPDIPTY PHTYHQPPYT IEPQHTSQNY YSTETPAAPY NYSNFQSYPS FQDSSVPSVP THQSSFYPAS DGTSAVSYSP
401: SGSNHPAPTQ YHPSADTTTH QVTPPAIAPP ASQYKYDSSY QPEVEKIAEA HKAARFAVGA LAFDDVSVAV DHLKRALDLL TNPSAETH

Best Arabidopsis Sequence Match ( AT4G26750.1 )
(BLAST)

001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H

Arabidopsis Description

LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.