Factsheet for Bra026406.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000503.1-P
Bra012009.1-P
Bra038281.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26750.1	Bra000503.1-P	AT2G27600.1	17468262
AT4G26750.1	Bra012009.1-P	AT2G27600.1	17468262
AT4G26750.1	Bra038281.1-P	AT3G45640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89306	Canola	cytosol	98.09	98.09
CDX94288	Canola	cytosol	96.9	96.9
AT4G26750.1	Thale cress	cytosol	88.07	87.65
PGSC0003DMT400057424	Potato	nucleus	61.1	61.39
Solyc07g064980.2.1	Tomato	nucleus	60.62	61.06
VIT_19s0090g01240.t01	Wine grape	nucleus	61.34	60.33
GSMUA_Achr3P10980_001	Banana	nucleus	53.22	53.61
KRH73817	Soybean	nucleus	58.0	52.03
GSMUA_Achr9P12660_001	Banana	nucleus	50.84	51.45
KRH14310	Soybean	cytosol	59.43	51.13
GSMUA_Achr9P19810_001	Banana	cytosol	53.22	48.9
EER88310	Sorghum	nucleus	53.94	47.68
TraesCS7B01G190400.1	Wheat	cytosol	54.89	47.23
TraesCS7D01G225200.1	Wheat	cytosol	54.65	47.02
Zm00001d037417_P002	Maize	nucleus	53.22	46.17
HORVU7Hr1G045860.5	Barley	cytosol	53.7	46.01
TraesCS7A01G223600.1	Wheat	cytosol	53.46	46.0
Os06t0308800-01	Rice	nucleus	53.22	45.7
Zm00001d045870_P001	Maize	nucleus	53.94	40.0
Zm00001d037415_P002	Maize	cytosol	24.58	35.52

Protein Annotations

Gene3D:1.20.5.420	Gene3D:1.25.40.270	MapMan:22.5.4.4.2	EnsemblPlantsGene:Bra026406	EnsemblPlants:Bra026406.1	EnsemblPlants:Bra026406.1-P
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005768	GO:GO:0005771	GO:GO:0006810
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791
GO:GO:0009814	GO:GO:0016192	GO:GO:0042803	GO:GO:0080001	GO:GO:1900426	GO:GO:1903335
InterPro:IPR023175	UniProt:M4EC97	PFAM:PF04652	PANTHER:PTHR12741	PANTHER:PTHR12741:SF4	UniParc:UPI000254556C
InterPro:VPS_Vta1/CALS_N	SEG:seg	:	:	:	:

Description

AT4G26750 (E=1e-145) | hydroxyproline-rich glycoprotein family protein

Coordinates

chrA01:-:9513508..9516097

Molecular Weight (calculated)

46048.8 Da

IEP (calculated)

6.277

GRAVY (calculated)

-0.910

Length

419 amino acids

Sequence
(BLAST)

001: MSNTNEPAKT LLPYLQRADE LQKHEPLVAY YCRLYAMEKG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALNVFAK ADKQDRAGRA
101: DLGTAKTFYA ANIFFEILSQ FGPVPPDIEQ KQKYAAWKAA DIRKAIKEGR KPTPGDPVDD ESDLSLPSSG PSGSYDLGAS DTNVPSQHRT EPGPSHDSND
201: DSSHHHFPEV PQHHLPPPRF HDNPNNNYQT DVPPPPPSSY PSNDLLPPPT GPSDSPYPHP YNHQSYHQDP PQHMPPPPQN YPSHEPSPNS LPNFQSYPSF
301: SESSLPATPS HFPSHYQNPE PYYSSPHSAP APSSSSFASA PPPSPYSSSN GRVNVAPVLD PPAQKYHYDS SYQPGPEKIA EAHKAARFAV GALAFDEIST
401: AVEHLKKSLE LLTNPSAGH

Best Arabidopsis Sequence Match ( AT4G26750.1 )
(BLAST)

001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H

Arabidopsis Description

LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.