Factsheet for Solyc07g064980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 22364583
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g005170.2.1
Solyc11g007170.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26750.1	Solyc11g007170.1.1	AT2G27600.1	17468262
AT4G26750.1	Solyc06g005170.2.1	AT3G45640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057424	Potato	nucleus	92.79	92.57
VIT_19s0090g01240.t01	Wine grape	nucleus	69.95	68.31
CDX94288	Canola	cytosol	61.3	60.86
Bra026406.1-P	Field mustard	cytosol	61.06	60.62
CDX89306	Canola	cytosol	60.1	59.67
AT4G26750.1	Thale cress	cytosol	59.62	58.91
GSMUA_Achr3P10980_001	Banana	nucleus	57.21	57.21
KRH73817	Soybean	nucleus	62.74	55.89
KRH14310	Soybean	cytosol	65.38	55.85
GSMUA_Achr9P12660_001	Banana	nucleus	52.4	52.66
GSMUA_Achr9P19810_001	Banana	cytosol	56.97	51.97
EER88310	Sorghum	nucleus	57.93	50.84
TraesCS7B01G190400.1	Wheat	cytosol	59.38	50.72
TraesCS7D01G225200.1	Wheat	cytosol	59.13	50.51
HORVU7Hr1G045860.5	Barley	cytosol	58.89	50.1
TraesCS7A01G223600.1	Wheat	cytosol	58.41	49.9
Zm00001d037417_P002	Maize	nucleus	57.93	49.9
Os06t0308800-01	Rice	nucleus	58.17	49.59
Zm00001d045870_P001	Maize	nucleus	57.93	42.65
Zm00001d037415_P002	Maize	cytosol	28.37	40.69

Protein Annotations

Gene3D:1.20.5.420	Gene3D:1.25.40.270	MapMan:22.5.4.4.2	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005768	GO:GO:0005771	GO:GO:0006810	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0009791	GO:GO:0009814	GO:GO:0016192	GO:GO:0042803
GO:GO:0080001	GO:GO:1900426	GO:GO:1903335	InterPro:IPR023175	UniProt:K4CHH7	PFAM:PF04652
PANTHER:PTHR12741	PANTHER:PTHR12741:SF4	EnsemblPlantsGene:Solyc07g064980.2	EnsemblPlants:Solyc07g064980.2.1	UniParc:UPI000276C83F	InterPro:VPS_Vta1/CALS_N
SEG:seg	:	:	:	:	:

Description

Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Source:Projected from Arabidopsis thaliana (AT4G26750) UniProtKB/Swiss-Prot;Acc:Q9SZ15]

Coordinates

chr7:+:66922702..66927601

Molecular Weight (calculated)

45727.4 Da

IEP (calculated)

5.867

GRAVY (calculated)

-0.859

Length

416 amino acids

Sequence
(BLAST)

001: MSKDNEPAKL LLPYLQRADE LQKHEPLVAY YCRLYAMERG LRIPQNERTK TTSSILVSLI NQLEKDKKSL KLGPDDHLHV EGFALNVFAK ADKQDRAGRA
101: DLNTAKTFYA ASIFFEILNQ FGELQPDLEQ KQKYAAWKAA DIRKALKEGR KPIPGPPGDE GDTSEFTSVP SNTYDLPSSG TDSFIKPEPE SDSSNHMYDS
201: APLPARPSPP ATTPPPPHSH IPPSPSASTT QSPPSHFPPS PPSYPSGEYP SHNFQQPPPG DASENSSYSQ PYHHQPYTQE PQSHLSQPHY PSQYPNFQSY
301: PSFSESSLPS APSHYPSYYQ GADASYSTLP PSNTANYPSS AQYNSNDRNG SAPEVAAAPA KTYAYDSNYQ PPPEKIAEAH KAARFAVGAL AFDDVSIAVD
401: YLKKSLELLT NPSADQ

Best Arabidopsis Sequence Match ( AT4G26750.1 )
(BLAST)

001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H

Arabidopsis Description

LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.