Factsheet for GSMUA_Achr3P10980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P22550_001
GSMUA_Achr3P01430_001
GSMUA_Achr4P24320_001
GSMUA_Achr6P33100_001
GSMUA_Achr9P04280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26750.1	GSMUA_Achr2P22550_001	AT2G27600.1	17468262
AT4G26750.1	GSMUA_Achr3P01430_001	AT2G27600.1	17468262
AT4G26750.1	GSMUA_Achr4P24320_001	AT2G27600.1	17468262
AT4G26750.1	GSMUA_Achr6P33100_001	AT3G45640.1	21798944
AT4G26750.1	GSMUA_Achr9P04280_001	AT3G45640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P19810_001	Banana	cytosol	74.28	67.76
GSMUA_Achr9P12660_001	Banana	nucleus	63.22	63.53
VIT_19s0090g01240.t01	Wine grape	nucleus	59.13	57.75
Solyc07g064980.2.1	Tomato	nucleus	57.21	57.21
PGSC0003DMT400057424	Potato	nucleus	56.97	56.83
CDX94288	Canola	cytosol	53.85	53.46
Bra026406.1-P	Field mustard	cytosol	53.61	53.22
CDX89306	Canola	cytosol	53.61	53.22
AT4G26750.1	Thale cress	cytosol	52.88	52.26
EER88310	Sorghum	nucleus	58.65	51.48
Os06t0308800-01	Rice	nucleus	59.38	50.61
Zm00001d037417_P002	Maize	nucleus	58.41	50.31
TraesCS7B01G190400.1	Wheat	cytosol	58.65	50.1
TraesCS7D01G225200.1	Wheat	cytosol	58.65	50.1
TraesCS7A01G223600.1	Wheat	cytosol	57.69	49.28
HORVU7Hr1G045860.5	Barley	cytosol	57.69	49.08
KRH73817	Soybean	nucleus	54.57	48.61
KRH14310	Soybean	cytosol	55.53	47.43
Zm00001d045870_P001	Maize	nucleus	59.62	43.89
Zm00001d037415_P002	Maize	cytosol	25.48	36.55

Protein Annotations

EnsemblPlants:GSMUA_Achr3P10980_001	EnsemblPlants:GSMUA_Achr3T10980_001	EnsemblPlantsGene:GSMUA_Achr3G10980_001	Gene3D:1.20.5.420	Gene3D:1.25.40.270	InterPro:IPR023175
InterPro:VPS_Vta1/CALS_N	PANTHER:PTHR12741	PANTHER:PTHR12741:SF4	PFAM:PF04652	SEG:seg	UniParc:UPI000295DF35
UniProt:M0SDL5	MapMan:22.5.4.4.2	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G10980_001]

Coordinates

chr3:+:8133372..8137764

Molecular Weight (calculated)

45935.6 Da

IEP (calculated)

6.226

GRAVY (calculated)

-0.771

Length

416 amino acids

Sequence
(BLAST)

001: MGSEAEPAKL LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQKDRTK TTNALLLSLM NQLEKDKKSV KLGPDDYLYV EGFASNLFAK ADKQDRAGRA
101: DLNTAKTFYA ASIFFEILCQ FGELQPDIEQ KQKYAVWKAA DIRKALKEGR QPDPGPPVGD ADLSISSSPS SNTYDLQPSN SFSSSQQGGG ASPQHVDKNL
201: GRNENFAASY QTVDLSSQQT DGVNLQGFGQ SPMAPSSSYT GPDYPSDIHH HQPTSTPEYS AYSQQYEHHS FTNEHGPMPP NSHSPENPSP SFSYPNFQSY
301: PSFHDSTFPS APTHQPSYYH AHDSAYSHQP APVSHYTPSV QYASGSVNQN HAVQAPPSAE RYKYDSNYQP SAEKIAEAHK AARFAVGALA FDDVSVAVDF
401: LQRSLELLTN PSAQTH

Best Arabidopsis Sequence Match ( AT4G26750.1 )
(BLAST)

001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H

Arabidopsis Description

LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.