Factsheet for VIT_19s0090g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g03540.t01
VIT_06s0080g00160.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26750.1	VIT_06s0080g00160.t01	AT2G27600.1	17468262
AT4G26750.1	VIT_06s0004g03540.t01	AT3G45640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064980.2.1	Tomato	nucleus	68.31	69.95
PGSC0003DMT400057424	Potato	nucleus	67.37	68.82
CDX94288	Canola	cytosol	60.56	61.58
Bra026406.1-P	Field mustard	cytosol	60.33	61.34
CDX89306	Canola	cytosol	59.62	60.62
KRH73817	Soybean	nucleus	65.49	59.74
GSMUA_Achr3P10980_001	Banana	nucleus	57.75	59.13
AT4G26750.1	Thale cress	cytosol	58.22	58.91
KRH14310	Soybean	cytosol	66.43	58.11
GSMUA_Achr9P12660_001	Banana	nucleus	53.29	54.83
GSMUA_Achr9P19810_001	Banana	cytosol	55.63	51.97
EER88310	Sorghum	nucleus	57.04	51.27
TraesCS7B01G190400.1	Wheat	cytosol	57.51	50.31
TraesCS7D01G225200.1	Wheat	cytosol	57.04	49.9
Zm00001d037417_P002	Maize	nucleus	56.57	49.9
TraesCS7A01G223600.1	Wheat	cytosol	56.81	49.69
Os06t0308800-01	Rice	nucleus	56.57	49.39
HORVU7Hr1G045860.5	Barley	cytosol	56.57	49.28
Zm00001d045870_P001	Maize	nucleus	56.81	42.83
Zm00001d037415_P002	Maize	cytosol	26.53	38.97

Protein Annotations

Gene3D:1.20.5.420	Gene3D:1.25.40.270	EntrezGene:100253708	wikigene:100253708	MapMan:22.5.4.4.2	EMBL:AM437817
ProteinID:CAN73841	ProteinID:CAN73841.1	ProteinID:CCB50697	ProteinID:CCB50697.1	UniProt:F6HET5	EMBL:FN595751
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005768	GO:GO:0005771	GO:GO:0006810
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791
GO:GO:0009814	GO:GO:0016192	GO:GO:0042803	GO:GO:0080001	GO:GO:1900426	GO:GO:1903335
InterPro:IPR023175	EntrezGene:LOC100253708	wikigene:LOC100253708	PFAM:PF04652	PRINTS:PR01217	PANTHER:PTHR12741
PANTHER:PTHR12741:SF4	TIGR:TC57943	UniParc:UPI000198563E	ArrayExpress:VIT_19s0090g01240	EnsemblPlantsGene:VIT_19s0090g01240	EnsemblPlants:VIT_19s0090g01240.t01
InterPro:VPS_Vta1/CALS_N	unigene:Vvi.1794	RefSeq:XP_002277187	RefSeq:XP_002277187.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:7295441..7306726

Molecular Weight (calculated)

46614.8 Da

IEP (calculated)

6.006

GRAVY (calculated)

-0.830

Length

426 amino acids

Sequence
(BLAST)

001: MASENEPAKL LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQGERTK TTNSLLISLM KQLEKDKKAL KLGPDDHLHL EGFASNVFAR ADKQDRAGRA
101: DLNTAKTFYA ASIFFEILNQ FGELQPDLEQ KQKYAAWKAA DIRKALKEGR KPQPGPPVDE NDLSLPTSTT SGAYDLGPSQ TGPSFNPGPE SDPSPQFNGS
201: LSRQHSLNIT PSPPPTNITP SPPPTNITPS PPPTSFPPLP PNVPPPPSYR SADYPSHDFH PPPPTNRSEN SSYPQPYHPQ PYPQEPQQQL PQNCPSHETP
301: SSYSYPNFQS YPSFTESSLP AAPSHYPSYY QGSDASYSPQ SAPVSSYPSA AQYNSSGGNE AISEPAPSSS QTYQYDSNYQ PPAEKIAEAH KAARFAVGAL
401: AFDDVSVAVD FLKKSLELLT KPSAGQ

Best Arabidopsis Sequence Match ( AT4G26750.1 )
(BLAST)

001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H

Arabidopsis Description

LIP5EXT-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UUB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.