Factsheet for VIT_06s0080g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0079g00760.t01
VIT_13s0019g04680.t01
VIT_19s0090g01240.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	VIT_13s0019g04680.t01	AT3G54840.1	17468262
AT2G27600.1	VIT_04s0079g00760.t01	AT4G19640.1	17468262
AT2G27600.1	VIT_19s0090g01240.t01	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26619	Soybean	nucleus	93.3	92.66
KRH22691	Soybean	cytosol	87.3	92.42
KRH25197	Soybean	cytosol	92.15	91.94
KRH30451	Soybean	cytosol	91.69	91.47
GSMUA_Achr4P24320_001	Banana	cytosol	85.22	90.44
CDX93578	Canola	cytosol	89.38	90.0
Bra018640.1-P	Field mustard	cytosol	89.15	89.77
AT2G27600.1	Thale cress	cytosol	90.07	89.66
CDX95077	Canola	cytosol	88.91	89.33
VIT_13s0106g00490.t01	Wine grape	cytosol	89.38	89.17
CDY04504	Canola	cytosol	88.91	89.12
Bra012009.1-P	Field mustard	cytosol	88.91	88.91
CDX83275	Canola	cytosol	88.91	88.91
GSMUA_Achr2P22550_001	Banana	cytosol	84.53	88.83
CDX71438	Canola	cytosol	87.99	88.81
Bra000503.1-P	Field mustard	cytosol	88.68	88.68
GSMUA_Achr3P01430_001	Banana	cytosol	84.06	88.56
CDY31186	Canola	cytosol	88.68	88.48
VIT_10s0003g03500.t01	Wine grape	cytosol	33.72	36.78
VIT_15s0048g01720.t01	Wine grape	cytosol	37.64	33.2
VIT_09s0002g05260.t01	Wine grape	cytosol	35.57	29.56
VIT_14s0068g02130.t01	Wine grape	nucleus	32.79	21.26
VIT_16s0050g01830.t01	Wine grape	endoplasmic reticulum, vacuole	27.94	15.47
VIT_16s0050g01840.t01	Wine grape	cytosol, golgi, plasma membrane	28.41	15.32
VIT_16s0050g01850.t01	Wine grape	endoplasmic reticulum, vacuole	28.64	14.81
VIT_02s0025g00650.t01	Wine grape	endoplasmic reticulum, vacuole	28.41	14.71
VIT_16s0098g01260.t01	Wine grape	endoplasmic reticulum	24.02	13.47
VIT_01s0011g02220.t01	Wine grape	cytosol, mitochondrion, plastid	28.64	12.4
VIT_17s0000g01550.t01	Wine grape	cytosol, plastid	28.41	10.12
VIT_07s0005g00200.t01	Wine grape	plastid	27.71	9.32

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	EntrezGene:100242617	wikigene:100242617	MapMan:19.4.2.2	MapMan:22.5.4.4.1
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CCB51667	ProteinID:CCB51667.1
UniProt:F6HHH1	EMBL:FN595757	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005768	GO:GO:0005771	GO:GO:0006810	GO:GO:0007032	GO:GO:0007033	GO:GO:0008150
GO:GO:0009506	GO:GO:0009653	GO:GO:0009987	GO:GO:0010091	GO:GO:0016043	GO:GO:0016192
GO:GO:0016787	GO:GO:0016887	GO:GO:0030154	EntrezGene:LOC100242617	wikigene:LOC100242617	InterPro:MIT
InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212	PFAM:PF09336	ScanProsite:PS00674
PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540
TIGR:TC57048	UniParc:UPI00015CE6E9	ArrayExpress:VIT_06s0080g00160	EnsemblPlantsGene:VIT_06s0080g00160	EnsemblPlants:VIT_06s0080g00160.t01	InterPro:Vps4_C
unigene:Vvi.814	RefSeq:XP_002262762	RefSeq:XP_002262762.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:19898377..19916184

Molecular Weight (calculated)

48236.3 Da

IEP (calculated)

7.134

GRAVY (calculated)

-0.528

Length

433 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVKQAVQED NAGNYSKAFP LYMNALEYFK THLKYEKNPK IKEAITQKFT EYLRRAEEIR AVLDDGGAGP ASNGDAAVAT RPKTKPKDGE
101: GGDGEDPEQA KLRSGLNSAI IREKPNVKWS DVAGLESAKQ SLQEAVILPV KFPQFFTGKR RPWRAFLLYG PPGTGKSYLA KAVATEADST FFSVSSSDLV
201: SKWMGESEKL VSNLFQMARE SAPSIIFIDE IDSLCGQRGE SNESEASRRI KTELLVQMQG VGHNDQKVLV LAATNTPYAL DQAIRRRFDK RIYIPLPDLK
301: ARQHMFKVHL GDTPHNLTES DFESLAQKTE GFSGSDIAVC VKDVLFEPVR KTQDAMFFIN TPNDMWVPCG PKQPGAVQIS MQDLAGKGLA SKILPPPITK
401: NDFDKVLARQ RPTVSKSDLE VHERFTQEFG EEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.