Factsheet for VIT_13s0106g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P24320_001	Banana	cytosol	84.79	90.2
GSMUA_Achr2P22550_001	Banana	cytosol	85.25	89.81
Os01t0141100-02	Rice	cytosol, plasma membrane	62.44	89.44
VIT_06s0080g00160.t01	Wine grape	extracellular	89.17	89.38
GSMUA_Achr3P01430_001	Banana	cytosol	83.64	88.32
EES00346	Sorghum	cytosol	88.25	87.84
Zm00001d039904_P006	Maize	cytosol	87.33	87.13
PGSC0003DMT400050194	Potato	cytosol	86.18	85.98
Solyc11g007170.1.1	Tomato	cytosol	79.95	85.89
TraesCS3D01G053600.1	Wheat	cytosol	85.94	85.16
TraesCS3A01G054100.1	Wheat	cytosol	85.71	84.93
TraesCS3B01G065200.1	Wheat	cytosol	85.48	84.7
Zm00001d008596_P005	Maize	cytosol	87.33	83.3
Os02t0159900-01	Rice	plasma membrane	72.81	72.98
TraesCS6B01G161700.1	Wheat	cytosol	72.81	72.31
TraesCS6D01G122900.1	Wheat	cytosol	72.58	72.08
TraesCS6A01G133300.1	Wheat	cytosol	72.35	71.69
Os01t0141300-00	Rice	cytosol	72.12	65.48
HORVU3Hr1G010300.1	Barley	cytosol, plastid	72.12	59.73
VIT_10s0003g03500.t01	Wine grape	cytosol	34.1	37.28
VIT_15s0048g01720.t01	Wine grape	cytosol	35.94	31.77
VIT_09s0002g05260.t01	Wine grape	cytosol	35.25	29.37
VIT_14s0068g02130.t01	Wine grape	nucleus	31.57	20.51
VIT_16s0050g01830.t01	Wine grape	endoplasmic reticulum, vacuole	28.11	15.6
VIT_16s0050g01840.t01	Wine grape	cytosol, golgi, plasma membrane	28.57	15.44
VIT_16s0050g01850.t01	Wine grape	endoplasmic reticulum, vacuole	28.34	14.7
VIT_02s0025g00650.t01	Wine grape	endoplasmic reticulum, vacuole	28.11	14.59
VIT_16s0098g01260.t01	Wine grape	endoplasmic reticulum	24.42	13.73
VIT_01s0011g02220.t01	Wine grape	cytosol, mitochondrion, plastid	28.57	12.4
VIT_17s0000g01550.t01	Wine grape	cytosol, plastid	28.57	10.2
VIT_07s0005g00200.t01	Wine grape	plastid	27.65	9.32

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	EntrezGene:100243069	wikigene:100243069	MapMan:19.4.2.2	MapMan:22.5.4.4.1
Gene3D:3.40.50.300	UniProt:A5BIG1	InterPro:AAA+_ATPase	EMBL:AM460508	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
ProteinID:CAN83271	ProteinID:CAN83271.1	ProteinID:CCB58758	ProteinID:CCB58758.1	EMBL:FN596257	GO:GO:0000166
GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007018
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0016887	EntrezGene:LOC100243069
wikigene:LOC100243069	InterPro:MIT	InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212
PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SMART:SM00745
SUPFAM:SSF116846	SUPFAM:SSF52540	UniParc:UPI00015244E2	ArrayExpress:VIT_13s0106g00490	EnsemblPlantsGene:VIT_13s0106g00490	EnsemblPlants:VIT_13s0106g00490.t01
InterPro:Vps4_C	unigene:Vvi.17843	RefSeq:XP_002264023	RefSeq:XP_002264023.1	RefSeq:XP_010658766.1	RefSeq:XP_010658767.1
RefSeq:XP_010658768.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:10128826..10137794

Molecular Weight (calculated)

48245.1 Da

IEP (calculated)

8.066

GRAVY (calculated)

-0.516

Length

434 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVKQAVQED NAGNYSKAFP LYMNALEYFK THLKYEKNPK IKEAITQKFT EYLRRAEEIR AVLDDGGTGP ASNGGNASVA AKPKTKPKNG
101: DGGDGDDAEQ AKLRAGLNSA IITEKPNVQW SDVAGLESAK QALQEAVILP VKFPQFFTGK RRPWRAFLLY GPPGTGKSYL AKAVATEADS TFFSVSSSDL
201: VSKWMGESEK LVSNLFQMAR ESAPSIIFID EIDSLCGQRG EGNESEASRR IKTELLVQMQ GVGHNDQKVL VLAATNTPYS LDQAIRRRFD KRIYIPLPDL
301: KARQHMFKVH LGDTPHNLTE HDFEHLAYRT DGFSGSDISV CVNDVLFEPV RKTKDASYFV KTSNGIWVPC GPTQRGAVQV TLQELEAQGL ASKILPPPIS
401: RTDFEKVLAR QRPTVSKADL EVHNRFTKEF GEEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.