Factsheet for TraesCS3D01G053600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G140700.1
TraesCS1B01G157100.1
TraesCS1D01G139500.1
TraesCS4A01G035800.1
TraesCS4A01G294600.1
TraesCS4B01G019100.2
TraesCS4B01G268600.1
TraesCS4D01G017300.1
TraesCS4D01G267900.1
TraesCS5B01G014400.1
TraesCS5D01G022200.2
TraesCS7A01G223600.1
TraesCS7B01G190400.1
TraesCS7D01G225200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	TraesCS1A01G140700.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS1B01G157100.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS1D01G139500.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4A01G035800.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4B01G268600.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4D01G267900.1	AT3G54840.1	17468262
AT2G27600.1	TraesCS4A01G294600.1	AT4G19640.1	17468262
AT2G27600.1	TraesCS4B01G019100.2	AT4G19640.1	17468262
AT2G27600.1	TraesCS4D01G017300.1	AT4G19640.1	17468262
AT2G27600.1	TraesCS5B01G014400.1	AT4G19640.1	17468262
AT2G27600.1	TraesCS5D01G022200.2	AT4G19640.1	17468262
AT2G27600.1	TraesCS7A01G223600.1	AT4G26750.1	17468262
AT2G27600.1	TraesCS7B01G190400.1	AT4G26750.1	17468262
AT2G27600.1	TraesCS7D01G225200.1	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G054100.1	Wheat	cytosol	99.32	99.32
TraesCS3B01G065200.1	Wheat	cytosol	99.09	99.09
Zm00001d039904_P006	Maize	cytosol	94.75	95.4
EES00346	Sorghum	cytosol	94.06	94.5
Os01t0141100-02	Rice	cytosol, plasma membrane	65.07	94.06
Zm00001d008596_P005	Maize	cytosol	94.29	90.77
GSMUA_Achr4P24320_001	Banana	cytosol	83.56	89.71
GSMUA_Achr2P22550_001	Banana	cytosol	83.79	89.08
CDX93578	Canola	cytosol	86.76	88.37
Bra018640.1-P	Field mustard	cytosol	86.53	88.14
GSMUA_Achr3P01430_001	Banana	cytosol	82.65	88.08
CDX83275	Canola	cytosol	86.99	87.99
Bra000503.1-P	Field mustard	cytosol	86.76	87.76
CDX95077	Canola	cytosol	86.3	87.7
KRH26619	Soybean	nucleus	87.21	87.61
AT2G27600.1	Thale cress	cytosol	86.99	87.59
KRH25197	Soybean	cytosol	86.76	87.56
KRH22691	Soybean	cytosol	81.74	87.53
Bra012009.1-P	Field mustard	cytosol	86.3	87.3
CDY04504	Canola	cytosol	86.07	87.27
CDY31186	Canola	cytosol	86.3	87.1
KRH30451	Soybean	cytosol	86.3	87.1
CDX71438	Canola	cytosol	85.16	86.95
VIT_13s0106g00490.t01	Wine grape	cytosol	85.16	85.94
PGSC0003DMT400050194	Potato	cytosol	83.79	84.37
Solyc11g007170.1.1	Tomato	cytosol	77.63	84.16
TraesCS6D01G122900.1	Wheat	cytosol	73.97	74.14
HORVU3Hr1G010300.1	Barley	cytosol, plastid	84.02	70.23
Os01t0141300-00	Rice	cytosol	74.43	68.2
TraesCS3D01G271500.1	Wheat	cytosol	34.7	38.0
TraesCS7D01G060200.1	Wheat	cytosol	34.93	32.08
TraesCS3D01G294200.1	Wheat	plastid	32.42	32.05
TraesCS3D01G265900.1	Wheat	cytosol	34.93	29.37
TraesCS7D01G381400.1	Wheat	endoplasmic reticulum	23.06	27.15
TraesCS5D01G123800.1	Wheat	nucleus	33.33	21.22
TraesCS3D01G228100.4	Wheat	cytosol	27.4	14.94
TraesCS3D01G159200.1	Wheat	cytosol, vacuole	28.31	14.83
TraesCS1D01G431700.1	Wheat	mitochondrion	26.48	13.63
TraesCS7D01G186200.1	Wheat	mitochondrion	26.71	12.04
TraesCS6D01G284600.1	Wheat	mitochondrion	26.94	12.0
TraesCS7D01G127200.1	Wheat	cytosol	25.34	11.23
TraesCS4D01G168600.1	Wheat	cytosol	26.71	10.57
TraesCS2D01G114500.1	Wheat	cytosol, plastid	26.94	10.41
TraesCS4D01G145100.12	Wheat	plastid	28.08	10.02

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:MIT
InterPro:MIT_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212	PFAM:PF09336	ScanProsite:PS00674
PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS3D01G053600	EnsemblPlants:TraesCS3D01G053600.1	InterPro:Vps4_C	TIGR:cd00009	TIGR:cd02678	SEG:seg

Description

No Description!

Coordinates

chr3D:-:22047210..22052386

Molecular Weight (calculated)

48348.4 Da

IEP (calculated)

7.585

GRAVY (calculated)

-0.509

Length

438 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVKQAVQED NAGNYVKAFP LYMNALEYFK THLKYEKNPK IKEAITAKFT EYLRRAEEIR AVLDEGGGGP PGAPNGGDAA VATRPKTKGK
101: DGGGDGAGGD DSEQSKLRAG LNSAIITEKP NIKWNDVAGL ESAKQALQEA VILPVKFPQF FTGKRRPWRA FLLYGPPGTG KSYLAKAVAT EADSTFFSIS
201: SSDLVSKWMG ESEKLVANLF QMARENAPSI IFIDEIDSLC GTRGEGNESE ASRRIKTELL VQMQGVGHND DKVLVLAATN TPYALDQAVR RRFDKRIYIP
301: LPDAKARQHM FKVHLGDTPH SLSESDFEVL GRRTEGFSGS DVAVCVKDVL FEPVRKTQDA MYFFKTDGDM WMPCGSKQPG AVQTTMQELA SKGLASQILP
401: PPISKNDFEK VLARQRPTVG KKDLEVHEKF TKEFGEEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.