Factsheet for AT2G27600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83275	Canola	cytosol	96.09	96.54
Bra000503.1-P	Field mustard	cytosol	95.86	96.3
CDY04504	Canola	cytosol	95.63	96.3
Bra012009.1-P	Field mustard	cytosol	95.4	95.84
CDX71438	Canola	cytosol	94.48	95.8
CDY31186	Canola	cytosol	95.17	95.39
KRH26619	Soybean	nucleus	90.57	90.37
KRH22691	Soybean	cytosol	84.83	90.22
VIT_06s0080g00160.t01	Wine grape	extracellular	89.66	90.07
KRH30451	Soybean	cytosol	89.66	89.86
KRH25197	Soybean	cytosol	89.66	89.86
GSMUA_Achr4P24320_001	Banana	cytosol	82.99	88.48
Os01t0141100-02	Rice	cytosol, plasma membrane	61.38	88.12
Zm00001d039904_P006	Maize	cytosol	87.82	87.82
GSMUA_Achr2P22550_001	Banana	cytosol	82.99	87.62
EES00346	Sorghum	cytosol	87.82	87.61
TraesCS3A01G054100.1	Wheat	cytosol	88.05	87.44
TraesCS3B01G065200.1	Wheat	cytosol	87.82	87.21
TraesCS3D01G053600.1	Wheat	cytosol	87.59	86.99
GSMUA_Achr3P01430_001	Banana	cytosol	82.07	86.86
PGSC0003DMT400050194	Potato	cytosol	85.29	85.29
Solyc11g007170.1.1	Tomato	cytosol	79.08	85.15
Zm00001d008596_P005	Maize	cytosol	87.59	83.74
TraesCS6D01G122900.1	Wheat	cytosol	72.87	72.54
TraesCS6A01G133300.1	Wheat	cytosol	72.87	72.37
TraesCS6B01G161700.1	Wheat	cytosol	72.41	72.08
Os02t0159900-01	Rice	plasma membrane	71.49	71.82
Os01t0141300-00	Rice	cytosol	71.72	65.27
HORVU3Hr1G010300.1	Barley	cytosol, plastid	74.25	61.64
AT2G34560.2	Thale cress	cytosol	32.64	36.13
AT2G45500.5	Thale cress	cytosol	36.09	31.59
AT1G80350.1	Thale cress	cytosol	35.86	29.83
AT4G27680.1	Thale cress	endoplasmic reticulum, plasma membrane	24.6	26.88
AT5G53540.1	Thale cress	endoplasmic reticulum	24.6	26.55
AT3G27120.1	Thale cress	nucleus	32.18	20.59
AT5G52882.1	Thale cress	extracellular, vacuole	28.97	15.2
AT1G64110.2	Thale cress	cytosol	28.74	15.08
AT4G28000.2	Thale cress	extracellular	27.82	14.54
AT3G19740.1	Thale cress	cytosol, mitochondrion, plastid	29.43	12.89
AT1G50140.1	Thale cress	mitochondrion	29.43	12.76
AT4G24860.1	Thale cress	cytosol, plastid	27.13	10.52
AT1G62130.1	Thale cress	cytosol, plastid	24.14	10.07
AT1G02890.1	Thale cress	plastid	28.28	9.87
AT4G02480.1	Thale cress	plastid	27.36	9.41

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	EntrezGene:817306	UniProt:A0A178VQU8
InterPro:AAA+_ATPase	ProteinID:AAC73040.1	ProteinID:AAM15184.1	ProteinID:AEC08019.1	EMBL:AF367297	ArrayExpress:AT2G27600
EnsemblPlantsGene:AT2G27600	RefSeq:AT2G27600	TAIR:AT2G27600	RefSeq:AT2G27600-TAIR-G	EnsemblPlants:AT2G27600.1	TAIR:AT2G27600.1
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EMBL:AY087749	EMBL:AY091684	Unigene:At.13265	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005768	GO:GO:0005771
GO:GO:0006810	GO:GO:0007032	GO:GO:0007033	GO:GO:0007049	GO:GO:0008150	GO:GO:0009506
GO:GO:0009653	GO:GO:0009987	GO:GO:0010091	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	GO:GO:0016787	GO:GO:0016887	GO:GO:0030154	GO:GO:0031902	GO:GO:0032585
GO:GO:0055075	GO:GO:0055078	InterPro:MIT	InterPro:MIT_dom_sf	RefSeq:NP_180328.1	ProteinID:OAP07771.1
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212	PFAM:PF09336	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	UniProt:Q9ZNT0
Symbol:SKD1	SMART:SM00382	SMART:SM00745	SUPFAM:SSF116846	SUPFAM:SSF52540	UniParc:UPI00000A4286
InterPro:Vps4_C	SEG:seg	:	:	:	:

Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]

Coordinates

chr2:+:11780896..11783992

Molecular Weight (calculated)

48595.6 Da

IEP (calculated)

6.963

GRAVY (calculated)

-0.582

Length

435 amino acids

Sequence
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.