Factsheet for Os02t0159900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0151900-01
Os03t0666500-01
Os06t0308800-01
Os10t0441800-01
Os12t0631100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27600.1	Os03t0151900-01	AT3G54840.1	17468262
AT2G27600.1	Os10t0441800-01	AT3G54840.1	17468262
AT2G27600.1	Os03t0666500-01	AT4G19640.1	17468262
AT2G27600.1	Os12t0631100-01	AT4G19640.1	17468262
AT2G27600.1	Os06t0308800-01	AT4G26750.1	17468262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0141100-02	Rice	cytosol, plasma membrane	60.97	87.13
TraesCS6D01G122900.1	Wheat	cytosol	81.52	80.78
TraesCS6A01G133300.1	Wheat	cytosol	81.06	80.14
TraesCS6B01G161700.1	Wheat	cytosol	80.83	80.09
GSMUA_Achr4P24320_001	Banana	cytosol	73.21	77.7
GSMUA_Achr2P22550_001	Banana	cytosol	72.29	75.97
GSMUA_Achr3P01430_001	Banana	cytosol	71.82	75.67
Bra018640.1-P	Field mustard	cytosol	72.98	73.49
CDX93578	Canola	cytosol	72.98	73.49
KRH26619	Soybean	nucleus	73.9	73.39
CDX95077	Canola	cytosol	72.75	73.09
Solyc11g007170.1.1	Tomato	cytosol	68.13	73.02
VIT_13s0106g00490.t01	Wine grape	cytosol	72.98	72.81
KRH30451	Soybean	cytosol	72.98	72.81
KRH25197	Soybean	cytosol	72.98	72.81
CDY04504	Canola	cytosol	72.06	72.22
KRH22691	Soybean	cytosol	68.13	72.13
CDX71438	Canola	cytosol	71.36	72.03
CDX83275	Canola	cytosol	71.82	71.82
Bra012009.1-P	Field mustard	cytosol	71.82	71.82
PGSC0003DMT400050194	Potato	cytosol	72.06	71.72
CDY31186	Canola	cytosol	71.82	71.66
Bra000503.1-P	Field mustard	cytosol	71.59	71.59
AT2G27600.1	Thale cress	cytosol	71.82	71.49
Os01t0141300-00	Rice	cytosol	64.9	58.79
Os02t0749150-01	Rice	mitochondrion	22.4	36.19
Os11t0661400-01	Rice	cytosol	19.63	35.27
Os01t0757400-02	Rice	cytosol	30.25	33.94
Os01t0673500-01	Rice	cytosol	31.87	33.66
Os06t0130000-02	Rice	cytosol	33.49	29.77
Os06t0225900-01	Rice	cytosol	25.17	29.7
Os01t0683100-01	Rice	extracellular	33.26	27.75
Os06t0714500-01	Rice	plasma membrane	24.71	27.23
Os01t0623500-01	Rice	cytosol	28.64	15.27
Os03t0344700-01	Rice	cytosol	26.56	14.84
Os01t0226400-01	Rice	plasma membrane	27.94	14.4
Os05t0584600-02	Rice	vacuole	27.25	13.8
Os07t0672500-02	Rice	cytosol, plastid	27.48	11.01
Os12t0443800-01	Rice	nucleus	3.7	4.19

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.280	MapMan:22.5.4.4.1	Gene3D:3.40.50.300	EntrezGene:4328374	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:BAD28045.1	ProteinID:BAS77097.1	ProteinID:EAZ21821.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	GO:GO:0016887	InterPro:MIT	InterPro:MIT_dom_sf
EnsemblPlantsGene:Os02g0159900	EnsemblPlants:Os02t0159900-01	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF04212	PFAM:PF09336
ScanProsite:PS00674	PANTHER:PTHR23074	PANTHER:PTHR23074:SF137	UniProt:Q6ETH5	SMART:SM00382	SMART:SM00745
SUPFAM:SSF116846	SUPFAM:SSF52540	UniParc:UPI00003CE5CC	InterPro:Vps4_C	RefSeq:XP_015626832.1	SEG:seg

Description

SKD1 protein (Vacuolar sorting protein 4b). (Os02t0159900-01)

Coordinates

chr2:+:3234312..3237645

Molecular Weight (calculated)

47242.1 Da

IEP (calculated)

5.939

GRAVY (calculated)

-0.373

Length

433 amino acids

Sequence
(BLAST)

001: MDGGMKEQGI LLVRKAVEED DAGNHARALP LYVHALDYLA AHLKYERNPR VRDAITAKLA GYIARAEEIR DALLPAAGDD ATPPAAAAEE GKAKCGGGED
101: ESDRAKLRAG LHSAIVSEKP NVRWSDVSGL DGAKQALQEA VVLPVEFPQF FTGKRKPWKA FLLYGPPGTG KSYLAKAVAT EADSTFFSIS SSDLLSKWMG
201: ESEKLVTNLF QMARENAPSI IFIDEIDSLC GQRGEGNESE ASRRVKTEFL VQMQGVGHND DKVLVLAATN TPYALDQAVR RRFDKRIYIP LPDLKARQHM
301: FKVHLGDTPH SLTKGDFESL ARRTDGFSGS DIAVCVKDVL FEPVRKTQDA MFFFGTAEGD GDGGAWTPCG PTRPGAVQIT MQELAAKGLA AQITPPPITR
401: TDLDKVLARQ KATVSEKDLE VYTRFTREFG EEG

Best Arabidopsis Sequence Match ( AT2G27600.1 )
(BLAST)

001: MYSNFKEQAI EYVKQAVHED NAGNYNKAFP LYMNALEYFK THLKYEKNPK IREAITQKFT EYLRRAEEIR AVLDEGGSGP GSNGDAAVAT RPKTKPKDGE
101: GGGKDGEDPE QSKLRAGLNS AIVREKPNIK WSDVAGLESA KQALQEAVIL PVKFPQFFTG KRRPWRAFLL YGPPGTGKSY LAKAVATEAD STFFSVSSSD
201: LVSKWMGESE KLVSNLFEMA RESAPSIIFV DEIDSLCGTR GEGNESEASR RIKTELLVQM QGVGHNDEKV LVLAATNTPY ALDQAIRRRF DKRIYIPLPE
301: AKARQHMFKV HLGDTPHNLT EPDFEYLGQK TEGFSGSDVS VCVKDVLFEP VRKTQDAMFF FKSPDGTWMP CGPRHPGAIQ TTMQDLATKG LAEKIIPPPI
401: TRTDFEKVLA RQRPTVSKSD LDVHERFTQE FGEEG

Arabidopsis Description

SKD1Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.