Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01499 | Sorghum | cytosol | 94.56 | 95.8 |
| TraesCS3A01G294400.1 | Wheat | cytosol | 90.41 | 92.33 |
| HORVU3Hr1G072910.6 | Barley | cytosol | 88.86 | 91.22 |
| TraesCS3B01G329000.2 | Wheat | cytosol | 90.41 | 90.18 |
| Zm00001d043410_P002 | Maize | cytosol | 93.52 | 86.99 |
| TraesCS3D01G294200.1 | Wheat | plastid | 90.67 | 79.01 |
| Os01t0673500-01 | Rice | cytosol | 81.87 | 77.07 |
| GSMUA_Achr7P25300_001 | Banana | cytosol | 80.83 | 76.66 |
| KRH58481 | Soybean | cytosol | 76.94 | 73.7 |
| KRH42362 | Soybean | cytosol, endoplasmic reticulum | 76.42 | 72.84 |
| VIT_10s0003g03500.t01 | Wine grape | cytosol | 74.87 | 72.8 |
| Solyc02g070440.2.1 | Tomato | cytosol | 71.5 | 71.5 |
| PGSC0003DMT400054532 | Potato | cytosol | 70.98 | 70.62 |
| CDX84641 | Canola | cytosol | 68.39 | 70.4 |
| CDY17260 | Canola | cytosol | 69.43 | 69.97 |
| CDX79566 | Canola | cytosol | 68.13 | 69.95 |
| CDX84306 | Canola | cytosol | 69.43 | 69.43 |
| Bra005414.1-P | Field mustard | cytosol | 70.21 | 69.13 |
| AT2G34560.2 | Thale cress | cytosol | 69.17 | 67.94 |
| Bra022979.1-P | Field mustard | plastid | 68.91 | 46.1 |
| Os01t0141100-02 | Rice | cytosol, plasma membrane | 33.42 | 42.57 |
| Os02t0749150-01 | Rice | mitochondrion | 26.42 | 38.06 |
| Os11t0661400-01 | Rice | cytosol | 22.02 | 35.27 |
| Os06t0225900-01 | Rice | cytosol | 32.12 | 33.79 |
| Os06t0130000-02 | Rice | cytosol | 38.34 | 30.39 |
| Os02t0159900-01 | Rice | plasma membrane | 33.94 | 30.25 |
| Os01t0683100-01 | Rice | extracellular | 40.67 | 30.25 |
| Os01t0141300-00 | Rice | cytosol | 37.05 | 29.92 |
| Os06t0714500-01 | Rice | plasma membrane | 29.79 | 29.26 |
| Os03t0344700-01 | Rice | cytosol | 35.23 | 17.55 |
| Os01t0623500-01 | Rice | cytosol | 31.87 | 15.15 |
| Os01t0226400-01 | Rice | plasma membrane | 32.38 | 14.88 |
| Os05t0584600-02 | Rice | vacuole | 32.9 | 14.85 |
| Os07t0672500-02 | Rice | cytosol, plastid | 34.72 | 12.4 |
| Os12t0443800-01 | Rice | nucleus | 3.11 | 3.14 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | EntrezGene:4325146 | MapMan:50.3.6 | InterPro:AAA+_ATPase | EMBL:AB110177 |
| InterPro:ATPase_AAA_core | ProteinID:BAD87507.1 | ProteinID:BAF06207.1 | ProteinID:BAS74414.1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0016787 | GO:GO:0016887 | EnsemblPlantsGene:Os01g0757400 | EnsemblPlants:Os01t0757400-02 | InterPro:P-loop_NTPase |
| PFAM:PF00004 | PANTHER:PTHR23074 | PANTHER:PTHR23074:SF92 | UniProt:Q7XXR9 | SMART:SM00382 | SUPFAM:SSF52540 |
| UniParc:UPI00001AB0C1 | RefSeq:XP_015649355.1 | SEG:seg | : | : | : |
Description
SKD1 protein, Vacuolar sorting protein4b, Vacuolar sorting protein 4bSimilar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2. (Os01t0757400-01);Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2. (Os01t0757400-02)
Coordinates
chr1:+:31807184..31811863
Molecular Weight (calculated)
43479.1 Da
IEP (calculated)
6.341
GRAVY (calculated)
-0.428
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFKGFWESR FGGKKEQEPE QNGHANGVAN GSVRKRTSDL AVYEQFEQQA RQTEVRAAAI RDGNADAIQK PLLPSFESAE MRNLAETLLR DIIRGSPDVK
101: WESIKGLENA KRLLKEAVVM PIKYPKYFTG LLSPWKGILL FGPPGTGKTM LAKAVATECK TTFFNISASS IVSKWRGDSE KLVKVLFELA RHHAPSTIFL
201: DEIDAIISQR GEARSEHEAS RRLKTELLIQ MDGLTKTNDL VFVLAATNLP WELDAAMLRR LEKRILVPLP EAEARHAMFE ELLPSTTSKL EVPYDTLVEK
301: TEGYSGSDIR LVCKEAAMQP LRRLMSVLEA RDELVPEEEL PEVGPLKPED IEVALRNTRP SAHLHAHRYE KFNQDYGSQI LSQEQA
101: WESIKGLENA KRLLKEAVVM PIKYPKYFTG LLSPWKGILL FGPPGTGKTM LAKAVATECK TTFFNISASS IVSKWRGDSE KLVKVLFELA RHHAPSTIFL
201: DEIDAIISQR GEARSEHEAS RRLKTELLIQ MDGLTKTNDL VFVLAATNLP WELDAAMLRR LEKRILVPLP EAEARHAMFE ELLPSTTSKL EVPYDTLVEK
301: TEGYSGSDIR LVCKEAAMQP LRRLMSVLEA RDELVPEEEL PEVGPLKPED IEVALRNTRP SAHLHAHRYE KFNQDYGSQI LSQEQA
001: MATDEPSQTR WSFLEFKTFY DAKFGRKKLP EEDVSNKDQP EDGSSNGNNG DVNNNSSPVT NQDGNTALAN GNVIREKPKK SMFPPFESAE TRTLAESLSR
101: DIIRGNPNIK WESIKGLENA KKLLKEAVVM PIKYPTYFNG LLTPWKGILL FGPPGTGKTM LAKAVATECN TTFFNISASS VVSKWRGDSE KLIRVLFDLA
201: RHHAPSTIFL DEIDAIISQR GGEGRSEHEA SRRLKTELLI QMDGLQKTNE LVFVLAATNL PWELDAAMLR RLEKRILVPL PDPEARRGMF EMLIPSQPGD
301: EPLPHDVLVE KSEGYSGSDI RILCKEAAMQ PLRRTLAILE DREDVVPEDE LPKIGPILPE DIDRALSNTR PSAHLHAHLY DKFNDDYGSQ ILK
101: DIIRGNPNIK WESIKGLENA KKLLKEAVVM PIKYPTYFNG LLTPWKGILL FGPPGTGKTM LAKAVATECN TTFFNISASS VVSKWRGDSE KLIRVLFDLA
201: RHHAPSTIFL DEIDAIISQR GGEGRSEHEA SRRLKTELLI QMDGLQKTNE LVFVLAATNL PWELDAAMLR RLEKRILVPL PDPEARRGMF EMLIPSQPGD
301: EPLPHDVLVE KSEGYSGSDI RILCKEAAMQ PLRRTLAILE DREDVVPEDE LPKIGPILPE DIDRALSNTR PSAHLHAHLY DKFNDDYGSQ ILK
Arabidopsis Description
AT2G34560 protein [Source:UniProtKB/TrEMBL;Acc:B9DGC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.